PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00016.1.g06200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 252aa MW: 28945 Da PI: 6.4059 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 223.7 | 9e-69 | 6 | 250 | 131 | 374 |
GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209 LasR++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++v+f+++ +++++e++++e+++++++E+l++n+ ++ Zjn_sc00016.1.g06200.1.am.mk 6 HLASREGGPPKLRITGIDVPETGlhPCKTIEETGKRLAEYAELFNVSFDYHG-ISSQWENIRIEDINIDKDEVLIINCLHK 85 79*******************9999999************************.7*************************** PP GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 + +l de+ +++s+rd+vL vk+++P+v+++ + ++s+ Fl rf e l y+s+lfd+l+++++r +e+ri +Er ll Zjn_sc00016.1.g06200.1.am.mk 86 MNNLGDETEDMDSARDRVLCNVKKMNPEVLIIGVVNGAYSSPFFLSRFREVLFYFSSLFDMLNTTVARSHEARILIERYLL 166 ********************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 g ++ nvvacegaer+er et+++Wr+r +aGFk++p+++ + k k + + + ++e+ ++l++gWk+r + ++S Zjn_sc00016.1.g06200.1.am.mk 167 GAAVLNVVACEGAERIERPETYKQWRRRSLKAGFKQLPVNQAILKRSTEETGKSYHEDFIIDEDGDWLLQGWKGRIMHALS 247 *********************************************9999999999888*********************** PP GRAS 372 aWr 374 +W+ Zjn_sc00016.1.g06200.1.am.mk 248 SWK 250 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.841 | 1 | 230 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-66 | 6 | 250 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MRTAEHLASR EGGPPKLRIT GIDVPETGLH PCKTIEETGK RLAEYAELFN VSFDYHGISS 60 QWENIRIEDI NIDKDEVLII NCLHKMNNLG DETEDMDSAR DRVLCNVKKM NPEVLIIGVV 120 NGAYSSPFFL SRFREVLFYF SSLFDMLNTT VARSHEARIL IERYLLGAAV LNVVACEGAE 180 RIERPETYKQ WRRRSLKAGF KQLPVNQAIL KRSTEETGKS YHEDFIIDED GDWLLQGWKG 240 RIMHALSSWK PK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-25 | 7 | 252 | 150 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440450.2 | 1e-137 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 4e-93 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1B6P5S1 | 1e-136 | A0A1B6P5S1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ca00616.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-95 | GRAS family protein |