PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g06070.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 988aa MW: 105039 Da PI: 8.195

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g06070.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	90	148	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Zjn_sc00016.1.g06070.1.am.mk 90 EPGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 148 56789************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-38	73	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-31	93	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:1.25.40.90	2.9E-15	440	551	IPR008942	ENTH/VHS
SMART	SM00273	3.4E-4	440	559	IPR013809	ENTH domain
Pfam	PF07651	2.4E-47	441	715	IPR011417	AP180 N-terminal homology (ANTH) domain
SuperFamily	SSF48464	4.91E-15	441	551	IPR008942	ENTH/VHS
SuperFamily	SSF89009	5.1E-34	586	715	No hit	No description
Gene3D	G3DSA:1.20.58.150	7.7E-31	591	716	IPR014712	Phosphoinositide-binding clathrin adaptor, domain 2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048268	Biological Process	clathrin coat assembly
GO:0030136	Cellular Component	clathrin-coated vesicle
GO:0003677	Molecular Function	DNA binding
GO:0005545	Molecular Function	1-phosphatidylinositol binding
GO:0030276	Molecular Function	clathrin binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MIFPPAFLDS SSWNDNQHHQ QQQQAHHQVA ANNGDGTNHE QLLHPSIMSG GALPEGGGGA 60 GAGAGAQMVG PAKPMSMSER ARLARIPLPE PGLKCPRCDS ANTKFCYFNN YSLSQPRHFC 120 RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKAAAAATPA GTTAAATAAL VPSGSTSSTS 180 TTANVPALSG PAGMLGGNLS MLPPLLRLAD FDAMSLGSSF TGIGKPTLDA AGNYSIGGAS 240 GGGAGAGLEQ WRVHQQMQGF PFLHAMDQGS LPPSLAMVMP GAFQLGLDPT DGRGVGTGGG 300 EDGSTGDLNG MPTKREGGYP RGMYGDHHLA AGYTTSPRED PTRPMAGRQA SCSSLPQSSV 360 HHPTPRTGQK KRGKSAFACR RLRSCQPVHK KPPVSSSPPL FLAEHQQQRQ RAKMSIRKAL 420 GAVKDQTTIS LAKVTGAVSP DLDVAVVRAT SHDDAPADAR HTAQVLRLTS GEGGSRAHVA 480 ACGLALVHRL VAEGDPHFRH EVLRPALAGR RAGEPLLALL GDFRDEAHSA SWDHSAFVRS 540 YAAYLDARVR FLVSLLPPPR SVRFADDPMF ASASSFSSPP NSSTSVHDMD PESLLTRSRQ 600 LRDLLDRVLA CRPSGAARNS RVVLAALYQL LKDSFQLHAD VTVVLAVLLD RFFDMEYSHC 660 VKAFEAYVGA AKQIDGLLGF YDWCKDVGVA RAADFPDVSR IDDKLLETFE QFLRERGRAV 720 QNDQSFLPPP PQSQVAPATQ QQRVDQDDQY DDMNRVKALP APAETPAAAR KTADPHQSDG 780 TDHQLVDLRE PADDQGNKLA LALFNAPPPP ATNGEWVAFP SDSDNTSVTS AWQTPAAEPG 840 NSDWELALIE TASTLSRQKA ALGGGLDPLL LGGMYDQGTV RQQVAAQAAS GSASSVAFPG 900 RRVAPVLALP APDGTVRTVG GDPFAASLAM AEMERKQELL VQEQQMWAQY RQHGMQGQPA 960 GLAAGGMTMP MPYGIPAMAY NQSAGYYY

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MIFPPAFLDS SSWNDNQHHQ QQQQAHHQVA ANNGDGTNHE QLLHPSIMSG GALPEGGGGA  60
GAGAGAQMVG PAKPMSMSER ARLARIPLPE PGLKCPRCDS ANTKFCYFNN YSLSQPRHFC  120
RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKAAAAATPA GTTAAATAAL VPSGSTSSTS  180
TTANVPALSG PAGMLGGNLS MLPPLLRLAD FDAMSLGSSF TGIGKPTLDA AGNYSIGGAS  240
GGGAGAGLEQ WRVHQQMQGF PFLHAMDQGS LPPSLAMVMP GAFQLGLDPT DGRGVGTGGG  300
EDGSTGDLNG MPTKREGGYP RGMYGDHHLA AGYTTSPRED PTRPMAGRQA SCSSLPQSSV  360
HHPTPRTGQK KRGKSAFACR RLRSCQPVHK KPPVSSSPPL FLAEHQQQRQ RAKMSIRKAL  420
GAVKDQTTIS LAKVTGAVSP DLDVAVVRAT SHDDAPADAR HTAQVLRLTS GEGGSRAHVA  480
ACGLALVHRL VAEGDPHFRH EVLRPALAGR RAGEPLLALL GDFRDEAHSA SWDHSAFVRS  540
YAAYLDARVR FLVSLLPPPR SVRFADDPMF ASASSFSSPP NSSTSVHDMD PESLLTRSRQ  600
LRDLLDRVLA CRPSGAARNS RVVLAALYQL LKDSFQLHAD VTVVLAVLLD RFFDMEYSHC  660
VKAFEAYVGA AKQIDGLLGF YDWCKDVGVA RAADFPDVSR IDDKLLETFE QFLRERGRAV  720
QNDQSFLPPP PQSQVAPATQ QQRVDQDDQY DDMNRVKALP APAETPAAAR KTADPHQSDG  780
TDHQLVDLRE PADDQGNKLA LALFNAPPPP ATNGEWVAFP SDSDNTSVTS AWQTPAAEPG  840
NSDWELALIE TASTLSRQKA ALGGGLDPLL LGGMYDQGTV RQQVAAQAAS GSASSVAFPG  900
RRVAPVLALP APDGTVRTVG GDPFAASLAM AEMERKQELL VQEQQMWAQY RQHGMQGQPA  960
GLAAGGMTMP MPYGIPAMAY NQSAGYYY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108933	3e-95	AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
GenBank	GQ183552	3e-95	GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960513.1	0.0	probable clathrin assembly protein At4g32285
Swissprot	Q8S9J8	1e-156	CAP1_ARATH; Probable clathrin assembly protein At4g32285
TrEMBL	A0A1E5V014	0.0	A0A1E5V014_9POAL; Putative clathrin assembly protein
STRING	Si021497m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	8e-42	OBF-binding protein 3

Publications ? help Back to Top
Vandenbussche F, et al. Ethylene and auxin control the Arabidopsis response to decreased light intensity. Plant Physiol., 2003. 133(2): p. 517-27 [PMID:12972669] Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Mol. Cell Proteomics, 2007. 6(10): p. 1711-26 [PMID:17586839] Adamowski M, et al. A Functional Study of AUXILIN-LIKE1 and 2, Two Putative Clathrin Uncoating Factors in Arabidopsis. Plant Cell, 2018. 30(3): p. 700-716 [PMID:29511054]