PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g05900.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 608aa    MW: 68035.6 Da    PI: 5.0319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g05900.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-143885148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Zjn_sc00016.1.g05900.1.sm.mkhc 38 KGSWTEEEDAQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 85
                                    799*******************************************97 PP
2Myb_DNA-binding49.88.1e-1691134146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rgr T++E+ l+v++++++G++ W++Iar ++ gRt++++k++w++
  Zjn_sc00016.1.g05900.1.sm.mkhc  91 RGRITADEERLIVELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 134
                                     899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2433385IPR017930Myb domain
SuperFamilySSF466891.91E-2635132IPR009057Homeodomain-like
SMARTSM007173.9E-133787IPR001005SANT/Myb domain
PfamPF002496.3E-133885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-193992IPR009057Homeodomain-like
CDDcd001672.47E-104085No hitNo description
PROSITE profilePS5129424.30386140IPR017930Myb domain
SMARTSM007172.4E-1490138IPR001005SANT/Myb domain
PfamPF002491.3E-1391134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2293139IPR009057Homeodomain-like
CDDcd001671.08E-1095134No hitNo description
Gene3DG3DSA:3.30.200.201.0E-21309393No hitNo description
SuperFamilySSF561128.63E-79319593IPR011009Protein kinase-like domain
CDDcd066238.29E-147327587No hitNo description
PROSITE profilePS5001144.909329583IPR000719Protein kinase domain
SMARTSM002208.3E-79329583IPR000719Protein kinase domain
PfamPF000692.3E-62331583IPR000719Protein kinase domain
PROSITE patternPS001070335358IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.101.8E-58394590No hitNo description
PROSITE patternPS001080442454IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0007112Biological Processmale meiosis cytokinesis
GO:0010311Biological Processlateral root formation
GO:0009524Cellular Componentphragmoplast
GO:0003677Molecular FunctionDNA binding
GO:0004708Molecular FunctionMAP kinase kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDQSIASMTM CSSKNSKKGD CEQQRSGGSS TATMTMRKGS WTEEEDAQLV WFVRLFGERR  60
WDFLAKVSGL KRTGKSCRLR WVNYLHPDLR RGRITADEER LIVELHAKWG SRWSRIARSL  120
PGRTDNEIKN FWRTRMRKQK ALGDQRQCKD DRSTTTVAAA SPSSSSVTTA FFSGGSPNSG  180
GTATSSSTVT ESAQQGGSGE DDDEAELDEA STLTTASQHQ QECCYTMDQL WNEIAAAEAA  240
ASYSMVDGWG IGHAAAPAEP ASMPSPVWEF CSDYSLWMID DEGTASGTFK DGELRLNQRG  300
LQLISEEDRD ENQSTNLKVE DVQLSMDDLE MIQVIGKGSG GVVQLVRHKW VGTLYALKGI  360
QMNIQEAMRK QIVQELKINQ ATQSPHVVMC HQSFYHNGVI YLVLEYMDRG SLADIIKQVK  420
TILEPYLAVL EGLFYLHHER HVIHRDIKPS NLLVNHKGEV KITDFGVSAV LASSMGQRDT  480
FVGTYNYMAP ERISGSSYDY KSDIWSLGLV ILECATGRFP YIPSEGEGWL SFYELLEAIV  540
DQPPPSAPAD QFSPEFCSFI SFCIQKDPAE RMSASELLNH PFIKKFEDKD LDLRILVETL  600
EPPMNIPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sls_A7e-7332359321292Dual specificity mitogen-activated protein kinase kinase 1
3sls_B7e-7332359321292Dual specificity mitogen-activated protein kinase kinase 1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low temperature (12 degrees Celsius) treatment. {ECO:0000269|PubMed:12177502}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919170.0FP091917.1 Phyllostachys edulis cDNA clone: bphyem213a09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644211.10.0PREDICTED: mitogen-activated protein kinase kinase 1
SwissprotQ5QN750.0M2K1_ORYSJ; Mitogen-activated protein kinase kinase 1
TrEMBLA0A0E0JJF20.0A0A0E0JJF2_ORYPU; Uncharacterized protein
STRINGOPUNC01G17950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP615144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-53myb domain protein 59
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Wen JQ,Oono K,Imai R
    Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice.
    Plant Physiol., 2002. 129(4): p. 1880-91
    [PMID:12177502]
  3. Xie G,Kato H,Imai R
    Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice.
    Biochem. J., 2012. 443(1): p. 95-102
    [PMID:22248149]
  4. Kumar K,Sinha AK
    Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice.
    Rice (N Y), 2013. 6(1): p. 25
    [PMID:24280045]
  5. Wankhede DP,Kumar K,Singh P,Sinha AK
    Involvement of mitogen activated protein kinase kinase 6 in UV induced transcripts accumulation of genes in phytoalexin biosynthesis in rice.
    Rice (N Y), 2013. 6(1): p. 35
    [PMID:24295067]
  6. Kumar K,Sinha AK
    Genome-wide transcriptome modulation in rice transgenic lines expressing engineered mitogen activated protein kinase kinase 6.
    Plant Signal Behav, 2014. 9(3): p. e28502
    [PMID:24691103]
  7. Kamimura M,Han Y,Kito N,Che FS
    Identification of interacting proteins for calcium-dependent protein kinase 8 by a novel screening system based on bimolecular fluorescence complementation.
    Biosci. Biotechnol. Biochem., 2014. 78(3): p. 438-47
    [PMID:25036830]