PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g05280.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 324aa    MW: 36616.8 Da    PI: 6.2127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g05280.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.62.9e-2255126172
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                   +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + +
  Zjn_sc00016.1.g05280.1.am.mk  55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASAA 126
                                   7***************************************************************99888764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.39E-2154119No hitNo description
PfamPF138372.7E-1755148No hitNo description
PROSITE profilePS500907.51556112IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE  60
TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA  120
AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG  180
GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML  240
REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVALG EERLALVRRW REREDAWRAR  300
AEEREERRHQ LVAALLAKLG GDAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305981e-102AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAP0149611e-102AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-102CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363561e-102CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637590.11e-107trihelix transcription factor GT-3b
RefseqXP_015637591.11e-107trihelix transcription factor GT-3b
TrEMBLA0A0E0H8W81e-108A0A0E0H8W8_ORYNI; Uncharacterized protein
STRINGONIVA05G01910.11e-109(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-28Trihelix family protein