PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g03780.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 372aa    MW: 42283 Da    PI: 10.232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g03780.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-103982147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r  WT++E++++ +a +++G + WktI + +  ++t+ q++s+ qk+
  Zjn_sc00016.1.g03780.1.sm.mkhc 39 REEWTADEHDRF-HAMRMFGHD-WKTIGQFVA-TKTATQIRSHAQKH 82
                                    689********9.899****99.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-113388IPR009057Homeodomain-like
PROSITE profilePS5129412.2073487IPR017930Myb domain
SMARTSM007173.8E-53885IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.9E-103885IPR006447Myb domain, plants
PfamPF002491.1E-73982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-43982IPR009057Homeodomain-like
CDDcd001675.34E-64183No hitNo description
SuperFamilySSF549281.23E-6232302IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.9E-6265302IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MARKVTTSAR NLTGTPPAGS GKKKEKKKPR KPYTISRPRE EWTADEHDRF HAMRMFGHDW  60
KTIGQFVATK TATQIRSHAQ KHFLKVHKLA GGLAAPLPPL PRPRRATGAV LPRPTAASSA  120
TPVNALQSAM NWAPRSAACW SDRDDSTFTA TPDRSEQEAW VADSLSQDDG TVELPLAPDD  180
RRFAEVYRFV GDAFGSGAPS PVEVQLWRLR GMDPVVAETC KMPRYDDSYD RHDSRYDRYN  240
DRYDRYNDHY DRYDDRYDRY NDRYDQQQRS GRHASNTKLY VGQLSSRTQI EDLEDLFGKY  300
GRSLVVQEAV LNIRSLSPRK DNRGAGHKEP QLISYSSSPR SPQPRIRAER KGSYHGGSPR  360
RGGTHRSLSP NH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230KKEKKKPRK
22431EKKKPRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.17e-52protein REVEILLE 8
TrEMBLA0A2T8KI675e-51A0A2T8KI67_9POAL; Uncharacterized protein
STRINGOBART05G04360.11e-51(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.14e-18MYB_related family protein