PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00016.1.g01920.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 838aa MW: 93103.4 Da PI: 4.889 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 38 | 78 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l Zjn_sc00016.1.g01920.1.sm.mkhc 38 EEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 78 9*************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 84 | 126 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Zjn_sc00016.1.g01920.1.sm.mkhc 84 KEAWTQEEEIRLIHAHQTYGNK-WAELSKFLP-GRTDNAIKNHWH 126 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.9E-12 | 31 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.114 | 32 | 78 | IPR017930 | Myb domain |
CDD | cd00167 | 8.44E-13 | 38 | 78 | No hit | No description |
Pfam | PF13921 | 2.2E-15 | 38 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 38 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.39E-29 | 58 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.115 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 86 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-11 | 86 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
EEKGSPFGLR DWRFGAALRR VVAARLCRRW SSPGCAGEED EIIIQMVNKL GPKKWSTIAQ 60 ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEIRLIHAHQ TYGNKWAELS KFLPGRTDNA 120 IKNHWHSSVK KKIDSYRASG LLAQFQGIMH VEYPAVSLNI DSSSAMTQQH SEDSGFNVGE 180 VEGSTELSQS SLAKASCSQE EQIEPSLDSH VHAHNSLCQE PCYTNADNVA SVLPEMQHIA 240 DSDEDTHLQK FSQTTELPFD IDKEPKNSMS TDMQTSSELA GQLQYTQTMY NSENHGGSFN 300 PYAVDPDVPI SMSHNIPKYG HNVDVMCEVG ISCDKYLESE PWQGVSFQTV ACGSEAENTF 360 SAPLYPLQTS NSSTMIDTGS DGIPNINYES SNFPFFHQDL EGNSCHIASV DPNQQSYVSS 420 EDDKNRAPEP MENLPESEKK QLVDIEPSRQ PTVTFGKETL STHCDTVECE RNDVEALCYE 480 PPCFPSFEVP FVRCDLISSS DLPEFSPFGI RELMRSSLNF PTPLRLWSSP PRDGSPDAVL 540 KSAAKSFSST PSIMKKRPRE LSSPCADIID EKNLTTEQDC GNLDISCKII RRSCLGTADE 600 SFDLVSPGEQ TGLQQKKLKL FEENKENVKE ITDQDEIEGN VRGSHLVKGK RCSTVDSDFT 660 SNSHPPGILT QSNADNLNTP KHEYEYMNIM ADTPSVKRGL ESPSAWKSPL FTAFQGAYFM 720 SPAARAFDAL GLVKQINEQS ADALEEAHEV LASGSTKNRH SKGKWDKENT KSSLWKNGLI 780 ISKLSSEVMA EARVLDFNDC STPARKKDDT NQSSKSYDSP PMAIGAEKFG ICIERNVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-40 | 38 | 133 | 10 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-40 | 38 | 133 | 10 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808581.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_025808582.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A2T7E6M8 | 0.0 | A0A2T7E6M8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07395.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 3e-56 | myb domain protein 3r-4 |