PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g07690.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 556aa    MW: 58116 Da    PI: 9.2613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g07690.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0589111123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zjn_sc00015.1.g07690.1.sm.mk  89 FVCEVCNKGFQREQNLQLHRRGH 111
                                   89*******************88 PP
2zf-C2H213.20.00027165187123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zjn_sc00015.1.g07690.1.sm.mk 165 WKCDKCNKRYAVQSDWKAHSKTC 187
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.94E-788111No hitNo description
Gene3DG3DSA:3.30.160.607.6E-688111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09489111IPR007087Zinc finger, C2H2
SMARTSM003550.004189111IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-589111IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355300130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-5153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.94E-7160185No hitNo description
SMARTSM00355110165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAAASSSAYL FGLGDAQMQP MPLQQAAPAP PPAQNNPAAA TPAPKKKRNQ PGNPSNLFYF  60
LLCMITDYTH PDAEVIALSP KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK  120
NPKETRRKVY LCPEPTCVHH DPSRALGDLT GIKKHYCRKH GEKKWKCDKC NKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPPIGAGM YGSGGMALGL  240
SGMAASQLQS AFQDHAHSSG ATAMGANAAG QFELLMPSSA GTQAFRGAHP TSSSASPFYL  300
GGGEDGHQGQ AGHTSLLNGK PAFHGLMQLP EQHQQANNGL LNLGFFSGAT SGQQDARLVF  360
PDQFNGSAAG NGRGDGGEHG NSSAGHESGA IFSGNLMGNQ MAAGAGFSSS LYNNSSETVA  420
PPQMSATALL QKAAQMGATT SGGGGGSVNS LLRGLGSGGA LNGKPAGAAG FMAGESSSSR  480
STSQAENESQ FRDMMNSLAA SGNGAFSSGF PGVDDGKLST RDFLGVGGRN MNGAARLQLR  540
HGAAGIGMGS LDPEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34161223365Zinc finger protein JACKDAW
5b3h_F6e-34161223365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648994.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_008649003.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_020396172.10.0uncharacterized protein LOC542697 isoform X5
TrEMBLQ5UDB50.0Q5UDB5_MAIZE; INDETERMINATE-related protein 1
STRINGPavir.Fb02381.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-111indeterminate(ID)-domain 4