PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g07400.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 366aa MW: 38111.1 Da PI: 8.6532

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g07400.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	196.5	8.4e-61	169	304	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 +g++sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqqql+a a++ skr r++ Zjn_sc00015.1.g07400.1.am.mk 169 AGSISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLTAG--------AAEPSKRLRDS----- 236 6889***********************************************9987........45567777764..... PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ t+ ++++++++ +++P+evsseavfrcvr++ vd+++ e+aYqt+vsi+GhvfkGiL+d G++ Zjn_sc00015.1.g07400.1.am.mk 237 --ATPTSSGEQQQHQMVVGERFPREVSSEAVFRCVRLGPVDEDDPEVAYQTSVSIAGHVFKGILHDVGPD 304 ..2222223445567788899*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-59	171	304	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.9E-28	173	215	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.5E-22	255	303	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVAIAGAGNL PPPPQPLATR AKTGQNSREP ISRNPDSWLL GHGDEASAHK AEFKCTSSST 60 RRGGHADAGS AAETRLLGSR DATRNGRSAP ARGGGSHGRG DDHPSSAAYL YTTAPPRGAA 120 GFQLWPQLQT PVQEHSFYAP NIIRFADDPA AGASSSSRGG RGSASGLGAG SISCQDCGNQ 180 AKKDCAHMRC RTCCKSRGFD CPTHVKSTWV PAAKRRERQQ QLTAGAAEPS KRLRDSATPT 240 SSGEQQQHQM VVGERFPREV SSEAVFRCVR LGPVDEDDPE VAYQTSVSIA GHVFKGILHD 300 VGPDPSVAGG GMMIRHAAEG SSPSTAAAGE GGSVSAAPVS SSAAVMDPYP TPGPYGWAPF 360 FHGHPR

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVAIAGAGNL PPPPQPLATR AKTGQNSREP ISRNPDSWLL GHGDEASAHK AEFKCTSSST  60
RRGGHADAGS AAETRLLGSR DATRNGRSAP ARGGGSHGRG DDHPSSAAYL YTTAPPRGAA  120
GFQLWPQLQT PVQEHSFYAP NIIRFADDPA AGASSSSRGG RGSASGLGAG SISCQDCGNQ  180
AKKDCAHMRC RTCCKSRGFD CPTHVKSTWV PAAKRRERQQ QLTAGAAEPS KRLRDSATPT  240
SSGEQQQHQM VVGERFPREV SSEAVFRCVR LGPVDEDDPE VAYQTSVSIA GHVFKGILHD  300
VGPDPSVAGG GMMIRHAAEG SSPSTAAAGE GGSVSAAPVS SSAAVMDPYP TPGPYGWAPF  360
FHGHPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821984.1	1e-123	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9FXH7	5e-51	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A3L6PPK2	1e-131	A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRING	Si015301m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	9e-52	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]