PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g04860.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YC
Protein Properties Length: 482aa    MW: 51757 Da    PI: 8.3625
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g04860.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC165.38e-523444471101
                         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                   ql++fw++q   i+ +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksd
  Zjn_sc00015.1.g04860.1.am.mk 344 QLQMFWAEQyreIDAVTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSD 424
                                   89******9988999****************************************************************** PP

                         NF-YC  79 iaaavtrtdifdflvdivprdel 101
                                   iaaav+rt++fdflvdivpr+e 
  Zjn_sc00015.1.g04860.1.am.mk 425 IAAAVARTEVFDFLVDIVPREED 447
                                   ********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-30341438IPR009072Histone-fold
PfamPF008088.8E-21366429IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.9E-36367444IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MRAWRDGMSE HTVLSVAEAV VVSWTKPSRR PGSIETDDGC KRRCRAVCRC GARGWLRVCV  60
TTGPTEIAHG LGPLRERAAR RAAGEMTTDQ LQVRCYACVG CASVRQHSTQ QDPWPAGHGL  120
PVSTLQGGEG CALCAPTYCS LASTAPSSVA RASDTAAPAP QFPIIAATVS AMVAEQARKT  180
KVFIWASVTM GCDRWAKLDF EFYLGQAQPT DQLVLMGRSR PFRRPAVIFA NGNPLNKIKT  240
PPFFPSPRAS SATPSNPPPP PPTSSPSPAY ASETLAMDPK STTPPPPPHV MGAPIAYPPA  300
AAYAAPGAVA YPPGAAYPGP GAVAYPPAAV QQQPHQQSAA TQQQLQMFWA EQYREIDAVT  360
DFKNHNLPLA RIKKIMKADE DVRMIAAEAP VVFARACEMF ILELTHRGWA HAEENKRRTL  420
QKSDIAAAVA RTEVFDFLVD IVPREEDKDA EAAAAAVGAG IPHPAAGMPT NDPMAYYYVQ  480
PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-51352444395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422RRTLQKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924731e-155FP092473.1 Phyllostachys edulis cDNA clone: bphyst032d09, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-55nuclear factor Y, subunit C2