PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g04860.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 482aa MW: 51757 Da PI: 8.3625 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 165.3 | 8e-52 | 344 | 447 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++fw++q i+ +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksd Zjn_sc00015.1.g04860.1.am.mk 344 QLQMFWAEQyreIDAVTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSD 424 89******9988999****************************************************************** PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 iaaav+rt++fdflvdivpr+e Zjn_sc00015.1.g04860.1.am.mk 425 IAAAVARTEVFDFLVDIVPREED 447 ********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.04E-30 | 341 | 438 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-21 | 366 | 429 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.9E-36 | 367 | 444 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MRAWRDGMSE HTVLSVAEAV VVSWTKPSRR PGSIETDDGC KRRCRAVCRC GARGWLRVCV 60 TTGPTEIAHG LGPLRERAAR RAAGEMTTDQ LQVRCYACVG CASVRQHSTQ QDPWPAGHGL 120 PVSTLQGGEG CALCAPTYCS LASTAPSSVA RASDTAAPAP QFPIIAATVS AMVAEQARKT 180 KVFIWASVTM GCDRWAKLDF EFYLGQAQPT DQLVLMGRSR PFRRPAVIFA NGNPLNKIKT 240 PPFFPSPRAS SATPSNPPPP PPTSSPSPAY ASETLAMDPK STTPPPPPHV MGAPIAYPPA 300 AAYAAPGAVA YPPGAAYPGP GAVAYPPAAV QQQPHQQSAA TQQQLQMFWA EQYREIDAVT 360 DFKNHNLPLA RIKKIMKADE DVRMIAAEAP VVFARACEMF ILELTHRGWA HAEENKRRTL 420 QKSDIAAAVA RTEVFDFLVD IVPREEDKDA EAAAAAVGAG IPHPAAGMPT NDPMAYYYVQ 480 PQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-51 | 352 | 444 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 416 | 422 | RRTLQKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092473 | 1e-155 | FP092473.1 Phyllostachys edulis cDNA clone: bphyst032d09, full insert sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-55 | nuclear factor Y, subunit C2 |