PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g01890.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 542aa MW: 57500.9 Da PI: 10.144 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 265 | 312 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zjn_sc00015.1.g01890.1.am.mk 265 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 312 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 318 | 363 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zjn_sc00015.1.g01890.1.am.mk 318 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 363 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-24 | 256 | 315 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.846 | 260 | 312 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-29 | 262 | 359 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-13 | 264 | 314 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 265 | 312 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.13E-11 | 267 | 312 | No hit | No description |
PROSITE profile | PS51294 | 24.722 | 313 | 367 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-24 | 316 | 367 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 317 | 365 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 318 | 363 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-11 | 320 | 363 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MDRIAGSPPP PLLRFVLSVL VSRRSEADFN VKPCRGTTKS DPPQRHGQRN YRCAGSHVVP 60 SGSHPELCGD EGSVGDTPRF PGRTHVGVAS RVHRETSTTT RASSCRRNHP SPQFIPACAR 120 RPARGLVCFA RTKQANTVTA ACARAADASA VHIEPVHAPG FSGGTGRSLV AAVLALPLAA 180 SSSFFPPGPT RGQTRWGPRS AAVTHSQVRA TAYITRPCAA PTGPRPSLDR ASPSLLGLLV 240 SRGVVGWEER RMGRPPCCQK GGVKKGPWTP EEDLVLVSYV QEHGPGNWRA VPTNTGLMRC 300 SKSCRLRWTN YLRPGIKRGN FTDQEEKLIV HLQALLGNRW AAIASYLPER TDNDIKNYWN 360 THLKKKLGKM SVGGEDEESK LTAPKGQWER QLQTDIHTAR QALRGALSMD TSSPAPAAKP 420 EAHAPAPVGQ ATYASSAENI ARLLEGWMRP GAGNGGKTSS GPSGSSPSAV SGEGASAASQ 480 SGAARTPPEG STGANGKAED RGAVVAPGPA FSMLENWLLD DGMEHGDVGI MGMPLADPCD 540 FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-26 | 265 | 367 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-25 | 265 | 367 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-25 | 265 | 367 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 263 | 367 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-26 | 265 | 367 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-26 | 265 | 367 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837778 | 1e-141 | CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574549.1 | 1e-130 | transcription factor MYB30 | ||||
Swissprot | P81392 | 1e-100 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A3L6PM73 | 1e-135 | A0A3L6PM73_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa00895.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-90 | myb domain protein 30 |
Publications ? help Back to Top | |||
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