PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g01860.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41551 Da PI: 7.4049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g Zjn_sc00015.1.g01860.1.sm.mk 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTAAG 95 689***************************.89***************9888999************************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+d++++s++++ +glkk+Lvfykgra +g ktdW+mhe+rl Zjn_sc00015.1.g01860.1.sm.mk 96 FWKATGTDRPIYSEGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 142 *********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-58 | 15 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.046 | 16 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MEATNGISMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSEG TKCIGLKKSL 120 VFYKGRAARG MKTDWMMHEF RLPSSTDPTL PKRPIDKNIP LNDSWTICRI FKKTSSMAQR 180 GLLHTWGPPF PGATEAEMFS AFQTVQASEL ALESSSCSLQ AVPSAPSSQF TGRHALQGQQ 240 GNPPVEGSSC KLINFNCTPS LEPQNCPVIF PFEMPTSQKG AASVPLVFGE QSDHQLNGFV 300 VDSSAKVNGG TGSRSQDSSP TKPGNGVSMT SSDWEDVGMI NFPFDLGADS SDWKCNMSWD 360 SFLSPAAVQT ELPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-53 | 16 | 176 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-53 | 16 | 176 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-53 | 16 | 176 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-53 | 16 | 176 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-53 | 16 | 176 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-53 | 16 | 176 | 17 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822140.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 4e-94 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | K3YMN3 | 0.0 | K3YMN3_SETIT; Uncharacterized protein | ||||
STRING | Si015514m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 5e-96 | NAC family protein |
Publications ? help Back to Top | |||
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