PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g01680.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 593aa    MW: 63298 Da    PI: 9.5
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g01680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-1080115137
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                                   rg W + Ed +l ++v+++G+ +W++Ia+++  gR++
  Zjn_sc00015.1.g01680.1.am.mk  80 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSG 115
                                   899*****************************.**98 PP
2Myb_DNA-binding51.32.7e-16165207246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zjn_sc00015.1.g01680.1.am.mk 165 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 207
                                   689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.82775130IPR017930Myb domain
SuperFamilySSF466897.9E-878118IPR009057Homeodomain-like
SMARTSM007170.007479160IPR001005SANT/Myb domain
PfamPF002497.3E-980116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2281114IPR009057Homeodomain-like
CDDcd001672.29E-783115No hitNo description
Gene3DG3DSA:1.10.10.602.5E-22147165IPR009057Homeodomain-like
SuperFamilySSF466895.13E-21147217IPR009057Homeodomain-like
PROSITE profilePS5129424.91159213IPR017930Myb domain
SMARTSM007174.9E-13163211IPR001005SANT/Myb domain
PfamPF002491.6E-12164206IPR001005SANT/Myb domain
CDDcd001672.20E-10166206No hitNo description
Gene3DG3DSA:1.10.10.608.8E-20166212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPCSSPPPPW LLHLGSAAAD QASSSTSSRG GGRVLTGGTT TMDTGATAGG GAGGGGGGGG  60
GNAADHQESS SSGQSRLAAR GHWRPAEDAK LRELVALYGP QNWNLIAEKL DGRSGACVRV  120
PSLAFRVRFC STIPSAFCFA ATDWIIGKSC RLRWFNQLDP RISKRPFSDE EEERLMAAHR  180
FYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSTAY RRRKLNQAVQ RKLEAAATAT  240
ASALPPSAAG DVVVGHHHHL LAAHDAAACF GDPYGAFALR HYCSFPFPGA AEEPPPPFYL  300
FPALARPASP LQADYSTVAR HAGHLESPHR LTGRPASKTT VATLSETSGS DRHRWRKHGC  360
AQHYIHRIVV VVRDMPTHKW IAPLGGARRS GPVRPLLLAA MYPGVNALLE IGSDGRLETM  420
ALAALEDLDF QRPTVPRTAC ATAMRHHQYG GLPHLCLLLF TLEISPSRYL DLSSVVLVCH  480
CDVAFSSLFR PSAAPADTRL LPWQHQHQQP PPPGAAGRAV VVNGRYGPAE PPLLVPLPVP  540
GAWMGGHHLE PPFISEPAAA AAFDGGATRE GAGARAAAAA APAFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27802127107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419831e-108BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184298.11e-105transcription factor MYB21-like
TrEMBLA0A0E0LV691e-106A0A0E0LV69_ORYPU; Uncharacterized protein
TrEMBLA0A3B6FYR61e-106A0A3B6FYR6_WHEAT; Uncharacterized protein
STRINGOPUNC08G13850.21e-107(Oryza punctata)
STRINGTraes_3B_65172E704.11e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-62myb domain protein 105