PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g01190.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 324aa    MW: 35956.9 Da    PI: 7.215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g01190.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-081449136
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                  +g+WT+eEd++lv  +   G  +W+++++  g  R+
  Zjn_sc00015.1.g01190.1.sm.mk 14 KGPWTAEEDQKLVSFILSNGRCCWRAVPKLAGASRS 49
                                  79****************************995554 PP
2Myb_DNA-binding53.74.7e-1797137547
                                   -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +  E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zjn_sc00015.1.g01190.1.sm.mk  97 SDAEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 137
                                   778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-18588IPR009057Homeodomain-like
SuperFamilySSF466891.5E-10894IPR009057Homeodomain-like
PROSITE profilePS500908.897987IPR017877Myb-like domain
SMARTSM007172.5E-81389IPR001005SANT/Myb domain
PfamPF002492.6E-61449IPR001005SANT/Myb domain
CDDcd001677.84E-61687No hitNo description
SuperFamilySSF466892.33E-2174147IPR009057Homeodomain-like
PROSITE profilePS5129426.83388142IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2489142IPR009057Homeodomain-like
SMARTSM007172.0E-1592140IPR001005SANT/Myb domain
CDDcd001671.11E-1297138No hitNo description
PfamPF002499.6E-1597137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFIL SNGRCCWRAV PKLAGASRSL PRSPKFLCVW  60
RRIDPTTDSA GLLRCGKSCR LRWTNYLRPD LKRGLLSDAE EKLVIDLHAQ LGNRWSKIAS  120
HLPGRTDNEI KNHWNTHIKK KLRKMGIDPL THKPLQPTDH HHQQQEQLPP AEARPPKPEH  180
QRQPTPNTLT IEAAATSSQQ EEEQPPLLSK SPGFCTDEVP MIHPDEIIVP AQDDQRLLRP  240
TPTCATATAS PPPTSYSASA SSSCDEEAAL FPAVDEWPDA TCLMGLDDMI ATAPPAPWVD  300
EWLVQPPSPV FADPCFGAYP SSKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25121425108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336361e-104BT033636.1 Zea mays full-length cDNA clone ZM_BFc0115C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444373.21e-104myb-related protein Zm38
RefseqXP_003572214.11e-104transcription factor MYB20
SwissprotQ9C7U76e-83MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A3L6PKU91e-105A0A3L6PKU9_PANMI; Uncharacterized protein
STRINGBRADI3G36370.11e-104(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.15e-88myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]