PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g00350.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 486aa MW: 51354.9 Da PI: 5.0389

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g00350.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.1	2.9e-38	134	233	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+l+ l+++ +am++l+++Ae+r++dPv G++++il Zjn_sc00015.1.g00350.1.am.mk 134 ACAACKYQRRKCNSDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLRGLRPDLCAEAMNTLIFQAEMRVQDPVGGCYRLIL 214 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 l++q+e ++aela+++++ Zjn_sc00015.1.g00350.1.am.mk 215 GLERQIEIERAELAAVHHH 233 **************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.178	133	234	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-36	134	231	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MDPLSIFSLA KNGASKRAWR WINGADSPLA LSCSYSYDDG AGAASPSPHL ARASPLPAPP 60 PARAPRSATM TSASSSTGAA AAHAPHLHIS TNPTTALPSS SYCNKLSSGK ASGSHSPRGT 120 GSSGSGGSGS ANQACAACKY QRRKCNSDCP LAPYFPADQQ RRFLNAHRLF GVSNILKTLR 180 GLRPDLCAEA MNTLIFQAEM RVQDPVGGCY RLILGLERQI EIERAELAAV HHHLALCRQA 240 AAMPPKPGDF DVTSSNQAPL LLNADQDVVV DALYSNHHHE VLQKTEGHPH EDHQGHSPQQ 300 HGELFDYFYY DTAAAVDDGS SKPAALAINV DAMSEFGYGE DQKLDINVHD ELATGQQQQQ 360 LLDVNCHLDR NDYEVKAAPL LVDVFDMRQQ GVDVNADDID VKAVVDVNAD INIDINAVGA 420 NAEVDLNEEL QENDTNNNIA TCIQVGGGTS SGAELANGGG ACEGTMLAEV GLVCAGTWTA 480 VAGAKA

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MDPLSIFSLA KNGASKRAWR WINGADSPLA LSCSYSYDDG AGAASPSPHL ARASPLPAPP  60
PARAPRSATM TSASSSTGAA AAHAPHLHIS TNPTTALPSS SYCNKLSSGK ASGSHSPRGT  120
GSSGSGGSGS ANQACAACKY QRRKCNSDCP LAPYFPADQQ RRFLNAHRLF GVSNILKTLR  180
GLRPDLCAEA MNTLIFQAEM RVQDPVGGCY RLILGLERQI EIERAELAAV HHHLALCRQA  240
AAMPPKPGDF DVTSSNQAPL LLNADQDVVV DALYSNHHHE VLQKTEGHPH EDHQGHSPQQ  300
HGELFDYFYY DTAAAVDDGS SKPAALAINV DAMSEFGYGE DQKLDINVHD ELATGQQQQQ  360
LLDVNCHLDR NDYEVKAAPL LVDVFDMRQQ GVDVNADDID VKAVVDVNAD INIDINAVGA  420
NAEVDLNEEL QENDTNNNIA TCIQVGGGTS SGAELANGGG ACEGTMLAEV GLVCAGTWTA  480
VAGAKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-23	131	234	8	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-23	131	234	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820222.1	1e-116	uncharacterized protein LOC112896465
TrEMBL	A0A1E5VM40	1e-117	A0A1E5VM40_9POAL; LOB domain-containing protein 22
STRING	Sb07g019940.1	1e-108	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-33	LOB domain-containing protein 22