PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g06910.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 266aa MW: 28391.8 Da PI: 6.6666

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g06910.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.8	1.1e-11	55	109	47	101
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++lp +er +a+++++ eA r++dP yG++gv+ +lq++++ +++ela++++++ Zjn_sc00014.1.g06910.1.sm.mk 55 RSLPVHERGNAADTMATEAYRRVQDPAYGCAGVVVRLQEEIRAAQSELARTQAQI 109 67899*********************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-9	55	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSTSGASKGG SVRSQCRQPG HGQQAVRRVQ EPAQEVLPGL RSRSLLPGLG SPEIRSLPVH 60 ERGNAADTMA TEAYRRVQDP AYGCAGVVVR LQEEIRAAQS ELARTQAQIA VHAAAAGARQ 120 LMNAQVQAPP QQQAGDALMM VQQEPCQGLD TLFLDDVRAG DNLFDDDMRH RLLPPACWNY 180 AFTVVAPAED TLSRYRSTTS RPQSSLTTGI VAGTSIWNVS GEFAGPVHTE NSFLAARMAS 240 LIAQCTEDAR SSGGSPEAAK IQSQVI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063475	2e-62	BT063475.1 Zea mays full-length cDNA clone ZM_BFc0067H14 mRNA, complete cds.
GenBank	FJ910195	2e-62	FJ910195.1 Zea mays subsp. mays Mu tranposon insertion Mu1007971 flanking sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27534	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-09	LOB domain-containing protein 4