PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g05380.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 393aa MW: 42450.7 Da PI: 8.824

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g05380.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.2e-31	254	309	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zjn_sc00014.1.g05380.1.sm.mkhc 254 KSRRCWSPELHRQFVAALNKLGGPQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 309 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.021	251	311	IPR017930	Myb domain
SuperFamily	SSF46689	3.34E-17	252	312	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	252	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-26	254	309	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	256	307	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGLDVGEIGM GADLSLDLRH FASKAMKQTR SAQASDMDTY IRRLEEERGK IEVFRRELPI 60 CARLLADAID VMKEEAEKEK KNDHKEEEEE DGAAGDKSKW MSTAQLWTSG SGREAAEPER 120 VCGWAKAPSF VRSQKQESDK GRSSSEQKSF SVGALTLFNA VASGAPSSRQ RPRLRNNDDK 180 AADVEMPDLS LLSPPPITSV PAAAADKSRR LVVGLATAAA RACGMVPSAG GPTLCLPPQV 240 KQTTPQQQQQ QARKSRRCWS PELHRQFVAA LNKLGGPQVA TPKQIRELMK VEGLTNDEVK 300 SHLQKYRLHT RRTPSGPAVV SQPIVLVGGL WIPHQEHSQS GTQSQSSGSP QGPLHFSPAS 360 GVATASCEEE ASAAGPRSAT AGNDQQGILH RQS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGLDVGEIGM GADLSLDLRH FASKAMKQTR SAQASDMDTY IRRLEEERGK IEVFRRELPI  60
CARLLADAID VMKEEAEKEK KNDHKEEEEE DGAAGDKSKW MSTAQLWTSG SGREAAEPER  120
VCGWAKAPSF VRSQKQESDK GRSSSEQKSF SVGALTLFNA VASGAPSSRQ RPRLRNNDDK  180
AADVEMPDLS LLSPPPITSV PAAAADKSRR LVVGLATAAA RACGMVPSAG GPTLCLPPQV  240
KQTTPQQQQQ QARKSRRCWS PELHRQFVAA LNKLGGPQVA TPKQIRELMK VEGLTNDEVK  300
SHLQKYRLHT RRTPSGPAVV SQPIVLVGGL WIPHQEHSQS GTQSQSSGSP QGPLHFSPAS  360
GVATASCEEE ASAAGPRSAT AGNDQQGILH RQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	254	307	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804519.1	1e-126	transcription factor NIGTH1-like
TrEMBL	A0A0A9H211	1e-129	A0A0A9H211_ARUDO; Uncharacterized protein
STRING	Sb02g001600.1	1e-125	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-34	G2-like family protein