PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g04540.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28978 Da    PI: 8.9164
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g04540.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-281059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  Zjn_sc00014.1.g04540.1.sm.mk 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59
                                  9***********************************************96 PP
2K-box81.61.8e-2783164990
                         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                    ++ +++s +qe+ +Lk ++e Lq++qR+llGedL +Ls +eL qLe+q++k lk+iRs+K+++l +  ++l++k  e++ 
  Zjn_sc00014.1.g04540.1.sm.mk  83 PSSDEMQSNYQEYLNLKTRVEVLQHSQRNLLGEDLAPLSTNELDQLESQVDKTLKQIRSRKEQILQDANRTLKRKLTEVDA 163
                                   567889*********************************************************************999876 PP

                         K-box  90 e 90 
                                   e
  Zjn_sc00014.1.g04540.1.sm.mk 164 E 164
                                   5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.13E-40279No hitNo description
SuperFamilySSF554553.92E-30283IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-2285164IPR002487Transcription factor, K-box
PROSITE profilePS5129711.99988174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS  60
SNLFKTLERY QRYIYASADV AVPSSDEMQS NYQEYLNLKT RVEVLQHSQR NLLGEDLAPL  120
STNELDQLES QVDKTLKQIR SRKEQILQDA NRTLKRKLTE VDAEAAPFPQ LPWRGAPDAM  180
VSDGPPQPDH FFEALESNPS LQPAYVIPLS FYCRVDCPEP LLMANSFKPW ISTRSRCRNQ  240
VAATTTLLRG GHSQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19173172Myocyte-specific enhancer factor 2B
1tqe_Q7e-19173172Myocyte-specific enhancer factor 2B
1tqe_R7e-19173172Myocyte-specific enhancer factor 2B
1tqe_S7e-19173172Myocyte-specific enhancer factor 2B
6c9l_A7e-19173172Myocyte-specific enhancer factor 2B
6c9l_B7e-19173172Myocyte-specific enhancer factor 2B
6c9l_C7e-19173172Myocyte-specific enhancer factor 2B
6c9l_D7e-19173172Myocyte-specific enhancer factor 2B
6c9l_E7e-19173172Myocyte-specific enhancer factor 2B
6c9l_F7e-19173172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6616091e-170JN661609.1 Eleusine coracana panicle phytomer 2-like protein (PAP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311786.11e-119MADS-box transcription factor 34
SwissprotQ6Q9H61e-106MAD34_ORYSJ; MADS-box transcription factor 34
TrEMBLA0A1B6QI011e-118A0A1B6QI01_SORBI; Uncharacterized protein
STRINGSi037197m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136182630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J
    PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.
    Plant Cell Physiol., 2010. 51(1): p. 47-57
    [PMID:19933267]
  2. Gao X, et al.
    The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development.
    Plant Physiol., 2010. 153(2): p. 728-40
    [PMID:20395452]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]
  4. Lin X, et al.
    The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas.
    New Phytol., 2014. 202(2): p. 689-702
    [PMID:24372518]
  5. Conrad LJ, et al.
    The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
    Plant J., 2014. 80(5): p. 883-94
    [PMID:25279942]
  6. Liu M,Li H,Su Y,Li W,Shi C
    G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.
    Front Plant Sci, 2016. 7: p. 1006
    [PMID:27462334]