PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g01840.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 414aa    MW: 44964.5 Da    PI: 6.3605
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g01840.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.6e-072872340
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                                  +r C+ + + +++++C  ++ +lC+ C  + H+        H+v+
  Zjn_sc00014.1.g01840.1.sm.mk 28 ARSCDGCMRRRARWHCPADDAFLCQACDAAVHSAnplarrhHRVR 72
                                  678*****************************6689999977765 PP

2CCT66.48.1e-23335378144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zjn_sc00014.1.g01840.1.sm.mk 335 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 378
                                   9*****************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-82673IPR000315B-box-type zinc finger
PROSITE profilePS501199.7552673IPR000315B-box-type zinc finger
PfamPF006432.9E-52871IPR000315B-box-type zinc finger
CDDcd000211.25E-102973No hitNo description
PROSITE profilePS5101715.993335377IPR010402CCT domain
PfamPF062039.5E-18335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTNAGTAAAA AATATAAATG AVLGARTARS CDGCMRRRAR WHCPADDAFL CQACDAAVHS  60
ANPLARRHHR VRLLTASSSS SSPRCDPDAP AWLHGLKRGP RTPRSKPGSK HEAASAAIPA  120
AASAAVPDLE AEDSGSGIVG DTYIEHGLLD DDDDEDILYL VPEFDPMLAE LYNPMDDEGE  180
EQKPVCLIST ETSPEFASGS ADAKGLSAFD VPDMELASFA ADMESLLMGV EEGFDHPGFL  240
SEQKPQVNVD FGSDLEVTAT PAPEREDKKR KRPQMILKLD YEGVIASWAR EGGSPWFHGE  300
RRPHLDPNDS WPDFSAGIVR GGLVCNVTAV TGGEREARVS RYREKRRTRL FAKKIRYEVR  360
KLNAEKRPRM KGRFVKRTAL PPLPRPPQPS QQQKPQRAPP PTGMVLAPQV SEEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345361RRTRLFAKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLK4AAN00.0K4AAN0_SETIT; Uncharacterized protein
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-57B-box type zinc finger protein with CCT domain