PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00014.1.g01840.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 414aa MW: 44964.5 Da PI: 6.3605 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 28 | 72 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +r C+ + + +++++C ++ +lC+ C + H+ H+v+ Zjn_sc00014.1.g01840.1.sm.mk 28 ARSCDGCMRRRARWHCPADDAFLCQACDAAVHSAnplarrhHRVR 72 678*****************************6689999977765 PP | |||||||
2 | CCT | 66.4 | 8.1e-23 | 335 | 378 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Zjn_sc00014.1.g01840.1.sm.mk 335 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 378 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.0E-8 | 26 | 73 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.755 | 26 | 73 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-5 | 28 | 71 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.25E-10 | 29 | 73 | No hit | No description |
PROSITE profile | PS51017 | 15.993 | 335 | 377 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.5E-18 | 335 | 377 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MTNAGTAAAA AATATAAATG AVLGARTARS CDGCMRRRAR WHCPADDAFL CQACDAAVHS 60 ANPLARRHHR VRLLTASSSS SSPRCDPDAP AWLHGLKRGP RTPRSKPGSK HEAASAAIPA 120 AASAAVPDLE AEDSGSGIVG DTYIEHGLLD DDDDEDILYL VPEFDPMLAE LYNPMDDEGE 180 EQKPVCLIST ETSPEFASGS ADAKGLSAFD VPDMELASFA ADMESLLMGV EEGFDHPGFL 240 SEQKPQVNVD FGSDLEVTAT PAPEREDKKR KRPQMILKLD YEGVIASWAR EGGSPWFHGE 300 RRPHLDPNDS WPDFSAGIVR GGLVCNVTAV TGGEREARVS RYREKRRTRL FAKKIRYEVR 360 KLNAEKRPRM KGRFVKRTAL PPLPRPPQPS QQQKPQRAPP PTGMVLAPQV SEEN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 361 | RRTRLFAKKIRYEVRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982006.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | K4AAN0 | 0.0 | K4AAN0_SETIT; Uncharacterized protein | ||||
STRING | Si035937m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10004 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73870.1 | 2e-57 | B-box type zinc finger protein with CCT domain |