PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g01550.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 428aa MW: 46529 Da PI: 8.3867

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g01550.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	162.6	2e-50	178	334	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 aa +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ + +++sec e++sss Zjn_sc00014.1.g01550.1.am.mk 178 AASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSL 256 588************************************************************..66666999999999 PP TCP 81 sasnsssg......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 s++ ++ + ka+++++++k+++ksa+++ l+ke+rakar+rarertrek+r+++++ Zjn_sc00014.1.g01550.1.am.mk 257 SVDGKQDPteepggdqqqkgsgcsegkkpaKARRATTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 334 9996666677778888888899***77777777************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-44	180	330	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.876	181	239	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.54	310	327	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MVQQVRPCVL TSPHPREQQA ARYRSPLPVS PLSSIRRHTS LSLSQDLREG RETHQGLGVP 60 SPKQMFPFCD SPSPMDMLLY QQLQLSPPSP KPDQYSSFYN YPCSPPFAAA ADDDASSFHL 120 SYQQLGSAAA VTPPPAVIDS PELQIHPSME QPPAPKHDPS NAQGAGGAVS LDTASAAAAS 180 RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGYDK ASKTVQWLLN TSKAAIQEIM 240 TDDASSECVE DGSSSLSVDG KQDPTEEPGG DQQQKGSGCS EGKKPAKARR ATTTPKPPRK 300 SANAHPVLDK ETRAKARERA RERTREKHRM RWVKLASAID VEAAAGRDRP STSNLNHSPS 360 MNMASAAAEL EERCSSTLNN GGRTQQVSMA TEPSDMILTF GNGGYGGINY CQEQWELGGV 420 VFANSRFY

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MVQQVRPCVL TSPHPREQQA ARYRSPLPVS PLSSIRRHTS LSLSQDLREG RETHQGLGVP  60
SPKQMFPFCD SPSPMDMLLY QQLQLSPPSP KPDQYSSFYN YPCSPPFAAA ADDDASSFHL  120
SYQQLGSAAA VTPPPAVIDS PELQIHPSME QPPAPKHDPS NAQGAGGAVS LDTASAAAAS  180
RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGYDK ASKTVQWLLN TSKAAIQEIM  240
TDDASSECVE DGSSSLSVDG KQDPTEEPGG DQQQKGSGCS EGKKPAKARR ATTTPKPPRK  300
SANAHPVLDK ETRAKARERA RERTREKHRM RWVKLASAID VEAAAGRDRP STSNLNHSPS  360
MNMASAAAEL EERCSSTLNN GGRTQQVSMA TEPSDMILTF GNGGYGGINY CQEQWELGGV  420
VFANSRFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269\|PubMed:12524360, ECO:0000269\|PubMed:16642024, ECO:0000269\|PubMed:17947410, ECO:0000269\|PubMed:8536981, ECO:0000269\|PubMed:9087405}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982035.1	1e-167	transcription factor TEOSINTE BRANCHED 1
Swissprot	Q93WI2	1e-142	TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBL	A0A346M107	0.0	A0A346M107_CYNDA; Teosinte branched 1
STRING	Pavir.Ia00838.1.p	1e-171	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-24	TCP domain protein 12

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895] Clark RM,Tavaré S,Doebley J Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. Mol. Biol. Evol., 2005. 22(11): p. 2304-12 [PMID:16079248]