PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g00450.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 252aa MW: 27530 Da PI: 4.7816

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g00450.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52	9.3e-17	195	231	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Zjn_sc00014.1.g00450.1.sm.mkhc 195 CRNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 231 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.4E-8	61	96	IPR010399	Tify domain
PROSITE profile	PS51320	13.875	61	96	IPR010399	Tify domain
Pfam	PF06200	2.2E-11	65	95	IPR010399	Tify domain
PROSITE profile	PS51017	13.255	123	165	IPR010402	CCT domain
Pfam	PF06203	3.8E-15	123	163	IPR010402	CCT domain
SMART	SM00401	1.3E-8	189	242	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	7.13E-10	193	239	No hit	No description
CDD	cd00202	2.10E-14	194	247	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.4E-13	194	233	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	8.827	194	246	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.9E-14	195	231	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	195	222	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSDAAAARDS DAEMRDVDAA AAAPPGDDEG ESDTEDDEED EDPPAPAPAQ EAPAPEPVSA 60 LPSDPNLLTL LFQGEVYVFD SVTPDKVQAV LLLLGSSELP PGLATMILPT QNESKRTDIP 120 AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRWKG QFAGRVSLEG ESSAKGCDPV 180 FQGSGQDFPC RESKCRNCGT SEKMTPAMRR GPAGPRTLCN ACGLMWANKG TLRSCLKAKL 240 NIPIERFTND EY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963754	1e-116	EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds.
GenBank	EU964966	1e-116	EU964966.1 Zea mays clone 282829 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464073.1	1e-114	GATA transcription factor 18
Swissprot	Q10F25	1e-109	GAT18_ORYSJ; GATA transcription factor 18
TrEMBL	C5WPL5	1e-113	C5WPL5_SORBI; Uncharacterized protein
STRING	Sb01g011840.1	1e-113	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3460	37	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	6e-56	ZIM-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]