PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g00050.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 314aa MW: 35248.6 Da PI: 8.4509

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g00050.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.9	3e-07	237	269	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 r +++ e++ LA+++gL+++q+ +WF N+R ++ Zjn_sc00014.1.g00050.1.am.mk 237 RRLQELEKAALADSTGLDTKQINNWFINQRKRH 269 667888999*********************885 PP
2	ELK	35.3	2.5e-12	174	195	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sL+ E+s Zjn_sc00014.1.g00050.1.am.mk 174 ELKNRLLNKYSGYLSSLWRELS 195 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	7.9E-17	55	99	IPR005540	KNOX1
Pfam	PF03790	1.2E-19	57	97	IPR005540	KNOX1
Pfam	PF03789	1.4E-9	174	195	IPR005539	ELK domain
SMART	SM01188	9.5E-7	174	195	IPR005539	ELK domain
PROSITE profile	PS51213	10.51	174	194	IPR005539	ELK domain
PROSITE profile	PS50071	9.993	195	272	IPR001356	Homeobox domain
SMART	SM00389	7.2E-6	197	276	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-12	197	275	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-22	200	273	IPR009057	Homeodomain-like
CDD	cd00086	1.32E-8	204	272	No hit	No description
Pfam	PF05920	1.7E-10	215	268	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	247	270	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEPPLSLPAT SSKSTTTRFD LFLDQRASTP PAEVPKPPPA ASEPSRQSNN EGGSEILKAK 60 IVSHHLYPAL LRAFIDCRKV GAPPEVVGRL SAVASEVEMN SNDRQEQPED PELDQFMPQE 120 AWQCMPNCPV ERAHQPSDMN DKSYELGGGS SDEDEHETGG DVDGLPETSG EDKELKNRLL 180 NKYSGYLSSL WRELSRKKKK KGKLPREARQ KLLHWWQMHY RWPYPSVHLR PLMILSRRLQ 240 ELEKAALADS TGLDTKQINN WFINQRKRHW KPAPPPKLAL NYRLGGASSS TAHHAALHAE 300 GQYFTGGSAY SRGP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC090683	2e-41	AC090683.7 Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence.
GenBank	AC116369	2e-41	AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBank	AP014959	2e-41	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-41	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001336606.1	1e-117	uncharacterized protein LOC100193050 isoform 2
Swissprot	Q75LX7	2e-90	KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBL	B4FU34	1e-116	B4FU34_MAIZE; Uncharacterized protein
STRING	GRMZM2G061101_P01	1e-116	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4746	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-53	KNOTTED-like from Arabidopsis thaliana