PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g09640.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 40634.7 Da PI: 5.8687 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.5 | 1.4e-07 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Zjn_sc00013.1.g09640.1.sm.mk 126 HTCKVCGKGFKRDANLRMHMRGH 148 79*******************98 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0018 | 222 | 245 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C C+ k+Fs +L++H + + Zjn_sc00013.1.g09640.1.sm.mk 222 YVCRRCNvKRFSVLADLRTHEKHC 245 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.31E-6 | 124 | 151 | No hit | No description |
SMART | SM00355 | 0.0011 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.321 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-6 | 126 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 41 | 184 | 217 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 28 | 222 | 244 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
METGSLESAM EAQQEHTQTA GPGSGDPTTV LTFLEKKIGY LRGIFGSASR QVVSAELSCI 60 AAQLLSISQS LAATASDEDG PVHVKSPPPC ADSESSDDHD VVPPPAWSAY EVIQLEEREI 120 LAPHVHTCKV CGKGFKRDAN LRMHMRGHGE EYKTAAALAK PPAVVRRDVA PQSTPDATAA 180 RCLYSCPYVG CKRNREHKSF QPLKTAVCVK NHYRRSHCDK RYVCRRCNVK RFSVLADLRT 240 HEKHCGRDRW ICSCGTSFSR KDKLFGHVAA FDGHAPALPP DDEDLTNQCT AANDIGSDQI 300 DAEAISRMAS MDCFSDTSIF DEFNCSDMEG FPLPLADGPC LDDGRGFLSP IGIDSCSFEG 360 FGLFGPPGLE LEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794847.1 | 1e-158 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 7e-93 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A3L6SDL0 | 1e-159 | A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | Pavir.Ia00191.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-89 | C2H2 family protein |
Publications ? help Back to Top | |||
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