PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g08610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 494aa MW: 50445.6 Da PI: 10.2641

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g08610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	200	260	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Zjn_sc00013.1.g08610.1.am.mk 200 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 260 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-38	184	258	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	204	258	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	204	258	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	206	242	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MLLLPDIDRS LDQPRVSPHR RLRYSRSTTE QYVRGSAAID ACIPAVFISC IFPAAARAAG 60 MVPTLRPKGN AAVSSGVRAL RASGFSAAFL VHKPLSSSRS EIILSLITSI PCSLAVAQQQ 120 AHHGQLPSAG GGGGGGGVEP HQHQQQHQLP PVPPPGALMA PRPDMAMAGA ASAGGGPTGG 180 SAVRPGSMSE RARLANIPQP EPGLKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR 240 GGALRNVPVG GGCRRNKRSK SSKSNSSSAA SASATAGGTS SSTSSTTTGG GSAAATAAIM 300 PPQAQLPFLA SLHQFGGDHY STGASRLGFP GLSSLDPVDY QFRTGGGAGT AIGLEHWRLP 360 QIQQFPFLNR SDGVPPPMPG IYPFDIEGGG DAAGFVGQML AGSKVPGSSG LITQLASVKM 420 EDNNPQSTAM TNSPREFLGL SGSLPFWSGG NGAGGNSNNN GVGANSGGGG GAVGPGSSWV 480 DLAGFNPSSS GNIL

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MLLLPDIDRS LDQPRVSPHR RLRYSRSTTE QYVRGSAAID ACIPAVFISC IFPAAARAAG  60
MVPTLRPKGN AAVSSGVRAL RASGFSAAFL VHKPLSSSRS EIILSLITSI PCSLAVAQQQ  120
AHHGQLPSAG GGGGGGGVEP HQHQQQHQLP PVPPPGALMA PRPDMAMAGA ASAGGGPTGG  180
SAVRPGSMSE RARLANIPQP EPGLKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR  240
GGALRNVPVG GGCRRNKRSK SSKSNSSSAA SASATAGGTS SSTSSTTTGG GSAAATAAIM  300
PPQAQLPFLA SLHQFGGDHY STGASRLGFP GLSSLDPVDY QFRTGGGAGT AIGLEHWRLP  360
QIQQFPFLNR SDGVPPPMPG IYPFDIEGGG DAAGFVGQML AGSKVPGSSG LITQLASVKM  420
EDNNPQSTAM TNSPREFLGL SGSLPFWSGG NGAGGNSNNN GVGANSGGGG GAVGPGSSWV  480
DLAGFNPSSS GNIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792577.1	1e-143	dof zinc finger protein DOF2.4-like
TrEMBL	A0A3L6SDN7	1e-148	A0A3L6SDN7_PANMI; Dof zinc finger protein DOF2.4-like
STRING	Pavir.J14743.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	4e-45	OBF-binding protein 3