PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g05680.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 317aa    MW: 35079.6 Da    PI: 8.6585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g05680.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Zjn_sc00013.1.g05680.1.sm.mkhc 14 KGPWSPEEDTKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                    79*********************************************97 PP
2Myb_DNA-binding38.82.2e-1269111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +++eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
  Zjn_sc00013.1.g05680.1.sm.mkhc  69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.156962IPR017930Myb domain
SuperFamilySSF466892.72E-2612109IPR009057Homeodomain-like
SMARTSM007179.9E-121364IPR001005SANT/Myb domain
PfamPF002494.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001675.34E-91662No hitNo description
PROSITE profilePS5129422.17463117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002494.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2370117IPR009057Homeodomain-like
CDDcd001672.45E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSPE EDTKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QSRKDQRQQQ QHFMRQAGAS DGMKQEANGG ASGSSSMAEA AYSWHQQATT VPMQQPTPGI  180
AMDGHRPGDG VDESIRKLLH RLKLEGSPFA ALPQFVPPPL YEGSPSFAPT PCQVEITSLH  240
EAGVQCSNGL PSLEQDQNFH FNQVKLDGLD FFFGMGDQSI RWSEVNPLAC TNNTVASSSQ  300
GMQQYGLADE PANLGIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120181e-133AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981607.11e-170transcription factor MYB4
TrEMBLK4ACS41e-168K4ACS4_SETIT; Uncharacterized protein
STRINGSi036681m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-80myb domain protein 36