PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g04440.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 28708.3 Da PI: 7.4316 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 111 | 151 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g +++ qc++++ Zjn_sc00013.1.g04440.1.sm.mkhc 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKTQCIEHYT 151 *****************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00291 | 1.6E-10 | 47 | 92 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 1.2E-9 | 49 | 90 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 3.06E-14 | 51 | 114 | No hit | No description |
PROSITE profile | PS50135 | 10.824 | 51 | 94 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 1.68E-25 | 51 | 99 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 53 | 80 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 5.91E-13 | 106 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.432 | 106 | 158 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-11 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 110 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-9 | 111 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.97E-13 | 111 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGRSRGVQNS GDDDTGHRSK RRRVASSGDA SDSLSAVCGG AGEGGGKKAL YHCNYCNKDI 60 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLAFHLICPD WNADEEILLL 120 EGIEMYGLGN WAEVAEHVGT KSKTQCIEHY TTAYMNSPCY PLPDMSQISG KNRKELLAMA 180 KVQGDSKKAG KDEGTSLLPG DLASKAESSF SPSRVKLEDA LGEGPAARSP SHIAGGANKK 240 ASNVGHLKDG ANVSKVEGMS FCWMPYTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 2e-37 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 2e-37 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149065.1 | 1e-160 | transcriptional adapter ADA2 | ||||
Swissprot | Q75LL6 | 1e-150 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A3B6MXP9 | 1e-159 | A0A3B6MXP9_WHEAT; Transcriptional adapter | ||||
TrEMBL | A0A446TF19 | 1e-159 | A0A446TF19_TRITD; Transcriptional adapter | ||||
TrEMBL | A0A453LU28 | 1e-159 | A0A453LU28_AEGTS; Transcriptional adapter | ||||
TrEMBL | R7VYP1 | 1e-159 | R7VYP1_AEGTA; Transcriptional adapter | ||||
STRING | EMT00694 | 1e-160 | (Aegilops tauschii) | ||||
STRING | Traes_5DL_2054A21EE.1 | 1e-160 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7708 | 38 | 47 |
Publications ? help Back to Top | |||
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