PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g03210.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 588aa MW: 61340.3 Da PI: 6.711

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g03210.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.1e-24	215	258	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Zjn_sc00013.1.g03210.1.sm.mkhc 215 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 258 69***************************************986 PP
2	QLQ	58.1	2.6e-20	148	184	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+Pp Ll +i++ Zjn_sc00013.1.g03210.1.sm.mkhc 148 GPFTPSQWIELEHQALIYKYLAANSPIPPSLLIPIRR 184 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-11	148	184	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.563	149	184	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.0E-15	149	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	214	258	IPR014977	WRC domain
Pfam	PF08879	4.9E-20	216	257	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MDLGGVVMAA VDAGGGAELG LLGGSSLLKH GRSDAAGGED HGWGGRACKQ ARVADVSAAA 60 APFLLGSCSP GHGGEQMLSF SSAASSCPSI ASAAAAGSGG AAADVAVPLY YGTPASCSGE 120 DGDRRAPGGL SSVRLSTGMQ GAMARMRGPF TPSQWIELEH QALIYKYLAA NSPIPPSLLI 180 PIRRSLASPY SPAYFGTSTL GWGSFQLGYS GNADLEPGRC RRTDGKKWRC SRDAVADQKY 240 CERHMNRGRH RSRKHVEGQP GHAAKAMSAA VAAAATSATQ PGVLPASGAG ATVAGLTVNQ 300 HQQPVKNYAA GASDPCSLQY NREQMAKQNE SENMQESDNL SMLTSMNTRN NGSIFPFSKQ 360 NNPFEVSGSR PDFGLVSSDS LMSSHSSLEN VNLLSNEHQS SASLHHFVDW PRTLAQGGLA 420 WPDTEDMQAQ RTQVSVSAPI ASSELSSAST SPIHEKLMLS PLKLSREYSP VGLSIAANRD 480 EAGLVQGNWM FRDSSLGGPL GEVLTKNGNT EAMNCMSAPL NLLTDCWDSS PGLDSSPVGV 540 LQKTTFGSVS SSTGSSPRME NHGAYDGICN PPDDLGSVVV THPSIRLL

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MDLGGVVMAA VDAGGGAELG LLGGSSLLKH GRSDAAGGED HGWGGRACKQ ARVADVSAAA  60
APFLLGSCSP GHGGEQMLSF SSAASSCPSI ASAAAAGSGG AAADVAVPLY YGTPASCSGE  120
DGDRRAPGGL SSVRLSTGMQ GAMARMRGPF TPSQWIELEH QALIYKYLAA NSPIPPSLLI  180
PIRRSLASPY SPAYFGTSTL GWGSFQLGYS GNADLEPGRC RRTDGKKWRC SRDAVADQKY  240
CERHMNRGRH RSRKHVEGQP GHAAKAMSAA VAAAATSATQ PGVLPASGAG ATVAGLTVNQ  300
HQQPVKNYAA GASDPCSLQY NREQMAKQNE SENMQESDNL SMLTSMNTRN NGSIFPFSKQ  360
NNPFEVSGSR PDFGLVSSDS LMSSHSSLEN VNLLSNEHQS SASLHHFVDW PRTLAQGGLA  420
WPDTEDMQAQ RTQVSVSAPI ASSELSSAST SPIHEKLMLS PLKLSREYSP VGLSIAANRD  480
EAGLVQGNWM FRDSSLGGPL GEVLTKNGNT EAMNCMSAPL NLLTDCWDSS PGLDSSPVGV  540
LQKTTFGSVS SSTGSSPRME NHGAYDGICN PPDDLGSVVV THPSIRLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795429.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2S3IIH7	0.0	A0A2S3IIH7_9POAL; Uncharacterized protein
STRING	Si034822m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-49	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]