PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g02990.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 693aa    MW: 75940.8 Da    PI: 8.8684
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g02990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.31.7e-055085352855
                                   HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                                   +++  LA+++gL+ +q+ +WF N+R ++
  Zjn_sc00013.1.g02990.1.am.mk 508 TQKGALAESTGLDLKQINNWFINQRKRH 535
                                   67789********************885 PP
2ELK361.5e-12457478122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KYsgyL+sLkqE+s
  Zjn_sc00013.1.g02990.1.am.mk 457 ELKHHLLKKYSGYLSSLKQELS 478
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-18262309IPR005540KNOX1
PfamPF037902.8E-20263307IPR005540KNOX1
SMARTSM012562.7E-24316376IPR005541KNOX2
PfamPF037912.5E-16322374IPR005541KNOX2
PROSITE profilePS5121311.331457477IPR005539ELK domain
SMARTSM011884.9E-7457478IPR005539ELK domain
PfamPF037891.8E-9457478IPR005539ELK domain
PROSITE profilePS500719.863477538IPR001356Homeobox domain
SuperFamilySSF466895.56E-11478551IPR009057Homeodomain-like
SMARTSM003892.6E-4479542IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-18482540IPR009057Homeodomain-like
PfamPF059201.8E-8507534IPR008422Homeobox KN domain
PROSITE patternPS000270513536IPR017970Homeobox, conserved site
CDDcd000861.36E-6513539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MQGAGAAVTA TLQGAQSVIV RATRAPYVRS QPSSLELKGI LKEPLSMVVT SRWPARSPPH  60
ARAFPLPAHV LSSQGYSQCH YRRNNSLSRL ELRGYYHPRQ GYILSRSLHC ALPCPGFSGA  120
KYHTRPHASP PPPAERTSVG FSEITGSRGS DNGRRARSLH QDIPGDPPTP MEEITHHFGV  180
GGSGQGQQQH HHSWVSALGA VLAPQPSAGL PLTLNTVAAG NSGAHSGSSN PVLQLANGGS  240
LLDACVKAKE PSSSSPYAGD VEAIKAKIIS HPHYYSLLAA YLECQKASPV GAPPEVSARL  300
TAIAQEVEAR QRTSLVGLGS ATEPELDQFM VSHFYRLINE AYHEMLVKFR EELTRPLQEA  360
MEFMRRVESQ LNSLSISGRS LRRILSSARV WERAHGTVQG RGVSLPISCA GWCGLPDALV  420
HYAYPAQRGT GSSEEDQEGS GGETELPEVD AHGVDQELKH HLLKKYSGYL SSLKQELSKK  480
KKKGKLPKEA RQQLLNWMLI LPVIEQETQK GALAESTGLD LKQINNWFIN QRKRHWKPSE  540
EMHHLMMDGY HAPNAFYMDG HFLNEPGLYR FDRTCDAIDA PDAPRCGEVR IARSMHGRPL  600
WVGILEEAAA AKLVDWTGRV RRAMELPAAV SRSPSRLQAR VVQDSCPESR HDAEADAGPP  660
PRRSPAFYSS VFAQIEEIGW ERLVSSKGND GIS
Functional Description ? help Back to Top
Source Description
UniProtBinds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3174211e-102DQ317421.1 Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981913.11e-178homeotic protein knotted-1
SwissprotP243451e-178KN1_MAIZE; Homeotic protein knotted-1
TrEMBLA0A0A9CTZ31e-180A0A0A9CTZ3_ARUDO; Kn1
STRINGGRMZM2G017087_P021e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-60KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Lowe B,Mathern J,Hake S
    Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
    Genetics, 1992. 132(3): p. 813-22
    [PMID:1334895]
  2. Sinha N,Hake S
    Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
    Dev. Biol., 1990. 141(1): p. 203-10
    [PMID:2391001]
  3. Chen H,Jackson D,Kim JY
    Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
    Plant Signal Behav, 2014. 9(3): p. e28355
    [PMID:24603432]
  4. Sinha NR,Williams RE,Hake S
    Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
    Genes Dev., 1993. 7(5): p. 787-95
    [PMID:7684007]
  5. Greene B,Walko R,Hake S
    Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
    Genetics, 1994. 138(4): p. 1275-85
    [PMID:7896105]
  6. Mathern J,Hake S
    Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
    Genetics, 1997. 147(1): p. 305-14
    [PMID:9286690]