PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g02860.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 37617.6 Da PI: 6.068 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 172 | 219 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq Zjn_sc00013.1.g02860.1.sm.mkhc 172 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 219 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.809 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 172 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 172 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-17 | 173 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-14 | 174 | 223 | No hit | No description |
SMART | SM00353 | 1.0E-14 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAAAFGQ GEVDQALAAA ALMPQHYAAP 60 VAVEQRPRKA AKVNSSWDSC ITEQGSPADS SSPTILSFGA PSAAAAFAKA EVQAPNASYY 120 GSAAGPVKAP KPEVVDAGVS PFHARPVKRS YDAMVAAEVQ APVATRPASQ NQDHILAERK 180 RREKLSQRFI ALSKIVPGLK KMDKASVLGD AIKYVKQLQE QIKGLEDEAR RRPVEAAVLV 240 KKSQLSADDD DGSSCDENFA GGEAGTLPEI EARVSDRTVL VKIHCENGKG ALMTALSGVE 300 RLGLTIMNTN VLPFTSSSLD ITIMATTGDD FCLSVKDIVK KLNQAFKSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-13 | 173 | 228 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | ERKRRE |
2 | 178 | 183 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661241.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | K4ABY6 | 0.0 | K4ABY6_SETIT; Uncharacterized protein | ||||
STRING | Si036393m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-57 | bHLH family protein |