PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g02540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 317aa    MW: 35432.5 Da    PI: 9.7708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g02540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17449147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l+++v+++G+++W++I+++++ gR++k+c++rw++ 
  Zjn_sc00013.1.g02540.1.am.mk  4 RGHWRPSEDEKLKELVALYGPHNWNAISEKLQ-GRSGKSCRLRWFNQ 49
                                  899*****************************.***********996 PP
2Myb_DNA-binding51.91.8e-165699146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  r ++++eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zjn_sc00013.1.g02540.1.am.mk 56 RSPFSEEEEELLLASHRVHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                                  789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.433154IPR017930Myb domain
SMARTSM007173.6E-15352IPR001005SANT/Myb domain
PfamPF002493.2E-17449IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-28497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-26557IPR009057Homeodomain-like
CDDcd001673.32E-14748No hitNo description
SMARTSM007174.5E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.90255105IPR017930Myb domain
PfamPF002491.1E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2058104IPR009057Homeodomain-like
CDDcd001673.78E-67198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVA LYGPHNWNAI SEKLQGRSGK SCRLRWFNQL DPRINRSPFS  60
EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERTR MANKRCGAAA  120
GSAMENDSNP RSAMKDRPDV ANSMASLLDK YRSEVTGPFA IGHGSMEGYR STTDEDMTTD  180
KSVEFYDFLQ VNANSSDTKC GSSIEEQDEN RADDDQAEGG QVPFIDFLKP KASSEGTVPG  240
QAACRWSGSR EALNLIASNL RAHGSSPDTA RVPSTLPPGH RRRRELSATS TGARARDRSS  300
RRRFPWRGIV AAPARAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3221055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281911e-136KJ728191.1 Zea mays clone pUT6465 MYB transcription factor (MYB77) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644560.11e-122transcription factor MYB52 isoform X2
SwissprotQ6R0C42e-73MYB52_ARATH; Transcription factor MYB52
TrEMBLK4AEE91e-119K4AEE9_SETIT; Uncharacterized protein
STRINGSi037256m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.18e-72myb domain protein 54
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]