PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g01920.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 429aa    MW: 46577.4 Da    PI: 6.6679
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g01920.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.5e-072363337
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                  +r C+ + + +++++C  ++ +lC+ C  + H+       H
  Zjn_sc00013.1.g01920.1.sm.mk 23 ARSCDGCMRRRARWHCPADDAYLCQACDAAVHSAnplarrH 63
                                  578***************************99656666663 PP
2CCT66.38.5e-23326369144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zjn_sc00013.1.g01920.1.sm.mk 326 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 369
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-62168IPR000315B-box-type zinc finger
PROSITE profilePS501199.5842168IPR000315B-box-type zinc finger
CDDcd000211.69E-92468No hitNo description
PROSITE profilePS5101715.993326368IPR010402CCT domain
PfamPF062039.9E-18326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTNAGTAAAA AVATGAALGA RTARSCDGCM RRRARWHCPA DDAYLCQACD AAVHSANPLA  60
RRHHRARLPT ASSSSALQDP DAPTWLYGLK RGPRTPRSKP GSKHEDVCAT MAAASSSAVP  120
DLEAEDSGSG IVGDNEHGLE DDDDDLLYRV PVFDPTLAEL YNPTADEGEE QKPACLISSL  180
AETSPDFASG SGQTNELSAF DVPDMELASF AADMESLLMG VEDGLDDLGF LDDEKPQVNV  240
DLGTDLEVAG APAPEREDMK RKRPQMILKL DYEGVIASWA RDGGSLWFHG ERRPHLDPGD  300
SWPDFSAGIV RGGIVGNVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR  360
MKGRFVKRTA LPQLPQPSQQ QKPQRGPPPA GMVLAPQMGV QCTGASDFKT RGVRACKMHR  420
CTCMRPMHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336352RRTRLFAKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1E5WFM10.0A0A1E5WFM1_9POAL; Zinc finger protein CONSTANS-LIKE 7
TrEMBLK4AAN00.0K4AAN0_SETIT; Uncharacterized protein
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.13e-54B-box type zinc finger protein with CCT domain