PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g01610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 348aa MW: 37508.8 Da PI: 8.7681

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g01610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	162.3	2.5e-50	99	255	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 aa +kdrhski+T++g+RdRR+Rls ++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ + +++sec ++sss s Zjn_sc00013.1.g01610.1.am.mk 99 AASRKDRHSKICTAGGMRDRRMRLSFDIARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECVDGSSSLS 177 588************************************************************..66666977777777 PP TCP 82 as...nsssg.......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 ++ n ka+++++++k+++ksa+++ l+ke+rakar+rarertrek+r+++++ Zjn_sc00013.1.g01610.1.am.mk 178 VDgkhN---LteelgggdqqkkgngcsegkksaKARRETTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 255 763330...2456666677777789999999978888888************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.0E-45	101	251	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.558	102	160	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.54	231	248	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MPLYQQLQLS SPSPKPDQSS SSFYYYPCSP PFAAAADASS FDMSYQLDSA AATTPAPAVI 60 NSPELPMRPS MEQPPAPKHG PGNAQGAGGV SLDTASPAAA SRKDRHSKIC TAGGMRDRRM 120 RLSFDIARKF FALQDMLGFD KASKTVQWLL NTSKAAIQEI MTDDASSECV DGSSSLSVDG 180 KHNLTEELGG GDQQKKGNGC SEGKKSAKAR RETTTPKPPR KSANAHPVLD KETRAKARER 240 ARERTREKHR MRWVKLASAI DVEAAAGRDQ PNASNLNHSP SMNMASAAEL GERCSSTLNH 300 GGRTQEVSMP SEPNDMILAF GNGAYGGSNY CQEQWELGGV VFANSRFY

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MPLYQQLQLS SPSPKPDQSS SSFYYYPCSP PFAAAADASS FDMSYQLDSA AATTPAPAVI  60
NSPELPMRPS MEQPPAPKHG PGNAQGAGGV SLDTASPAAA SRKDRHSKIC TAGGMRDRRM  120
RLSFDIARKF FALQDMLGFD KASKTVQWLL NTSKAAIQEI MTDDASSECV DGSSSLSVDG  180
KHNLTEELGG GDQQKKGNGC SEGKKSAKAR RETTTPKPPR KSANAHPVLD KETRAKARER  240
ARERTREKHR MRWVKLASAI DVEAAAGRDQ PNASNLNHSP SMNMASAAEL GERCSSTLNH  300
GGRTQEVSMP SEPNDMILAF GNGAYGGSNY CQEQWELGGV VFANSRFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269\|PubMed:12524360, ECO:0000269\|PubMed:16642024, ECO:0000269\|PubMed:17947410, ECO:0000269\|PubMed:8536981, ECO:0000269\|PubMed:9087405}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796975.1	1e-154	transcription factor TEOSINTE BRANCHED 1-like
Swissprot	Q93WI2	1e-131	TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBL	A0A346M107	1e-179	A0A346M107_CYNDA; Teosinte branched 1
STRING	Pavir.Ia00838.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-25	TCP domain protein 12

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895] Clark RM,Tavaré S,Doebley J Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. Mol. Biol. Evol., 2005. 22(11): p. 2304-12 [PMID:16079248]