PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g00460.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 287aa    MW: 30486 Da    PI: 4.5942
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g00460.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.9e-16205239133
                            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                                     C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  Zjn_sc00013.1.g00460.1.am.mkhc 205 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 239
                                     ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.316499IPR010399Tify domain
SMARTSM009792.0E-76499IPR010399Tify domain
PfamPF062006.5E-126898IPR010399Tify domain
PROSITE profilePS5101713.324133175IPR010402CCT domain
PfamPF062031.6E-14133173IPR010402CCT domain
SMARTSM004017.6E-8199251IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-9203240No hitNo description
CDDcd002026.48E-13204239No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13204239IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440205232IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13205239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSDAAAARDA DAEMRDAAAS TGAPPGDEGE SDTEDDDDDE VDDEEPPAPA PAQGAPAPEP  60
VSAMTADPNQ LTMLFQGEVY VFDSVAPDKV QAVLLMLGSS ELPPGLASMV LPNQNESKGY  120
DDILRRTDIP AKRVASLIRF REKRKDRNFD KKIRYAVRKE VALRMQRRKG QFAGRANLEG  180
ESSATGCDPA SRVSGQDFPC RESKCQNCGT SEKMTPAMRR GPAGPRTLCN ACGLMWANKS  240
NLAISQSGSD NKAPLIPKND YVAASDGGVR GNCVPAGAAD IEGPKAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.11e-121GATA transcription factor 18
SwissprotA2XKR71e-122GAT18_ORYSI; GATA transcription factor 18
SwissprotQ10F251e-122GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0D9ZBQ01e-120A0A0D9ZBQ0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G30120.11e-121(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-64ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]