PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00013.1.g00370.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 68aa MW: 7676.49 Da PI: 4.2851 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.5 | 3e-10 | 6 | 38 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +ryps +e+ +LA ++gL+ +q+++WF N R + Zjn_sc00013.1.g00370.1.sm.mk 6 DRYPSDSEKLRLAVSTGLSRSQISNWFINARVR 38 79*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.305 | 1 | 42 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0052 | 1 | 46 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-14 | 5 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.87E-11 | 6 | 43 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 7 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-13 | 8 | 38 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MADSCDRYPS DSEKLRLAVS TGLSRSQISN WFINARVRLW KPMIEEMYNE ELCEDDPLSN 60 STSGASSS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY082396 | 9e-43 | AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559582.1 | 3e-24 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_024312616.1 | 3e-24 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_024312617.1 | 3e-24 | BEL1-like homeodomain protein 11 | ||||
Swissprot | O65685 | 1e-20 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A2T7C2N2 | 2e-23 | A0A2T7C2N2_9POAL; Uncharacterized protein | ||||
STRING | BRADI1G12520.1 | 1e-23 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 5e-23 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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