PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 339aa    MW: 36407.2 Da    PI: 8.0606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.6e-15172218455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Zjn_sc00013.1.g00010.1.am.mk 172 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 218
                                   699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-19172227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18172239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-16173222No hitNo description
SMARTSM003532.3E-16174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEDSSNFMQW AMTTLHHEHH QQAVVVDGDR GEATFPSLHA LREASQVAEM VQELIAETHS  60
TNSWSSGDGK TTTDGSRVGN NNNLPPAAVD HDVWPASPNS AVRQRSCGVT NPPVSLVSWN  120
FSAAAAQPQP GGDGVLVETA ARGLPDLAYG SPPARSARLK SSGSMGSPYA QDHIMAERKR  180
REKINQRFIE LSTVIPGLKK MDKATILSDA TRYVKELQEK LKDLEAGGGR STETVAVLKR  240
PCLHAAATPD GDGFPLSASS GTAAVSKQLP EIEARFSEKS VMVRIHCENG KAVAVKVLAV  300
IEELHLGIVH ANVMPFSACT LIITISAKAR RKKISPLHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659952e-56AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140919.11e-139uncharacterized protein LOC100272997
RefseqXP_004982204.11e-140transcription factor bHLH18
RefseqXP_020403288.11e-139putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_020403289.11e-139putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A0A9D0A71e-146A0A0A9D0A7_ARUDO; Uncharacterized protein
STRINGGRMZM2G120021_P011e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-36bHLH family protein