PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g09000.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 477aa    MW: 50466.5 Da    PI: 7.2633
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g09000.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.29e-2854124373
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++ 
  Zjn_sc00012.1.g09000.1.am.mk  54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPLQFPPQHAQ 124
                                   78*************************************************************99999443 PP
2TCP531.3e-162763272273
                           TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                                   vRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++lt ++++++++ 
  Zjn_sc00012.1.g09000.1.am.mk 276 VRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLTPLKFPPQHAQ 327
                                   9*******************************************99999443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2555118IPR005333Transcription factor, TCP
PROSITE profilePS5136928.59655113IPR017887Transcription factor TCP subgroup
PROSITE profilePS5136913.754247316IPR017887Transcription factor TCP subgroup
PfamPF036344.6E-12276321IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MISGNHTNEE LAGCRKAEQP AVVDAGAAKS AAASSRPWPP STESRIVRVS RVFGGKDRHS  60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIDATQHEI DKLPPLQFPP  120
QHAQDLVAHL QPTSMLTPIA SAAAEATAAS SVLDGDKGGI KGLMGLNNSV SLGNGAMPLS  180
HGLHFAGESW TNGGSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFTM  240
KEASDQFPDR ARLAGVRRQG PAQQGEDRQG ATRPAVRLSV PTAIQLYDLQ DRLGLSQPSK  300
VVDWLIDATQ HEIDKLTPLK FPPQHAQDLV AHLQPTSMLT PFASAAAAAT AASSVLDGDK  360
GGIKGLMGLN NSVGLGNGAM SLAHGLYFTG ESWTNGGSVH DQVSHRNSPQ PTVAHHSPFS  420
SLLSLSPGPQ LVFYSPEGGG FAVKEASDQF PVDNLEHWQG QLSLNSARSF LHSGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1960114155Putative transcription factor PCF6
5zkt_B1e-1960114155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366941e-117BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds.
GenBankBT0689421e-117BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds.
GenBankBT0692791e-117BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds.
GenBankEU9678771e-117EU967877.1 Zea mays clone 306784 hypothetical protein mRNA, complete cds.
GenBankKJ7268261e-117KJ726826.1 Zea mays clone pUT3365 TCP transcription factor (TCP7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.11e-116transcription factor TCP13 isoform X1
RefseqXP_004961522.11e-116transcription factor TCP13 isoform X1
RefseqXP_012700333.11e-116transcription factor TCP13 isoform X1
TrEMBLA0A3L6SYL41e-117A0A3L6SYL4_PANMI; Transcription factor TCP13-like isoform X1
STRINGSi022830m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5