PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00012.1.g05750.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 883aa MW: 96757 Da PI: 9.3495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 6.1e-14 | 435 | 479 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Zjn_sc00012.1.g05750.1.am.mk 435 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 479 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0024 | 322 | 374 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.3E-9 | 324 | 379 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.993 | 324 | 372 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.72E-4 | 326 | 368 | No hit | No description |
PROSITE profile | PS51294 | 17.568 | 428 | 484 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.03E-17 | 430 | 484 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-16 | 431 | 482 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.3E-12 | 432 | 478 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-13 | 432 | 482 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 435 | 480 | No hit | No description |
Pfam | PF00249 | 2.9E-11 | 435 | 479 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MQCVHYQLAR RRRNDSNVGA MAADRWRAGR VCAPERLAVS VLAFRDLERK GRGGSANVVV 60 ILVVLVGLQE PRVPGGNFWL RGWVSGKKGP GDRRSSKTSG WLLVRSCDGG IAERPGRKGC 120 ALFIWRHLFV APKSKLLAFG SMPRGGHCCH CAQHRAGVGY RTEAANFEQH GTGLGLDDRV 180 VPGATDLMGT RVLGPGRPAQ LPLPLRFNDS GESGHVLPRN RQSTPHTTPD HEGDPDSCTR 240 LKLYYHHRLV HKYPFFPSAP TLSPASGLAR RTRLPFAPTG KVKSCRAEMM KESWMEVLPS 300 PPATRFAAQA AGGWFLQDRQ PVPGVWTLEE NKRFERALAS VDWDAPDRWE CVASMLPGRT 360 VADVVSHFDD LENDVHFIEA GLMPLPHYGA GDDSQSAAGF TFDWDAGDLG FKRSCYVVGG 420 KRGRGQDQER KKGVPWTEEE HKLFLMGLKK YGRGDWRNIS RNFVTSRTPT QVASHAQKYF 480 IRLNSGGKDK RRSSIHDITT VNLPDEDSSN PSPSPPSVLT ATSTPSSGGT VMSEQFGVIM 540 DSKPPPPPMG QHNHFLPHPY GNVKLEPHHG GLFDDSVLMQ MQCGQLQPLG NELDGGPPIE 600 ELGRITCQPP LPVQSMVPPP ERVVWTVDEH KAAVLLLLPD SLRPPLRAPT LSCPADPPRK 660 MCYFSGSHSQ ARGIGQFPVA GCMAVRGGEN RNATRERERC GDLIRGNQLF APVPRGERKV 720 DLFAEDAILG EFLASGGACG ISSALGKRKN LNAVERDGSK NESLSTRKLK AKNRDCNLQL 780 WTCMWTQKWD GAKDACNPTQ ANSGGCQSLV PWSRVLSALP SCNWAGVGGR RTGEDSIEPW 840 LSLWASCVGV GKKAYTTHNV EPFVIGHVNA RGTGTFFSLT PQW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 326 | 388 | 11 | 73 | RADIALIS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-74 | MYB family protein |