PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g05750.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 883aa    MW: 96757 Da    PI: 9.3495
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g05750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-14435479347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Zjn_sc00012.1.g05750.1.am.mk 435 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 479
                                   8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0024322374IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-9324379IPR009057Homeodomain-like
PROSITE profilePS500905.993324372IPR017877Myb-like domain
CDDcd001671.72E-4326368No hitNo description
PROSITE profilePS5129417.568428484IPR017930Myb domain
SuperFamilySSF466896.03E-17430484IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16431482IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-12432478IPR009057Homeodomain-like
SMARTSM007175.8E-13432482IPR001005SANT/Myb domain
CDDcd001671.53E-10435480No hitNo description
PfamPF002492.9E-11435479IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MQCVHYQLAR RRRNDSNVGA MAADRWRAGR VCAPERLAVS VLAFRDLERK GRGGSANVVV  60
ILVVLVGLQE PRVPGGNFWL RGWVSGKKGP GDRRSSKTSG WLLVRSCDGG IAERPGRKGC  120
ALFIWRHLFV APKSKLLAFG SMPRGGHCCH CAQHRAGVGY RTEAANFEQH GTGLGLDDRV  180
VPGATDLMGT RVLGPGRPAQ LPLPLRFNDS GESGHVLPRN RQSTPHTTPD HEGDPDSCTR  240
LKLYYHHRLV HKYPFFPSAP TLSPASGLAR RTRLPFAPTG KVKSCRAEMM KESWMEVLPS  300
PPATRFAAQA AGGWFLQDRQ PVPGVWTLEE NKRFERALAS VDWDAPDRWE CVASMLPGRT  360
VADVVSHFDD LENDVHFIEA GLMPLPHYGA GDDSQSAAGF TFDWDAGDLG FKRSCYVVGG  420
KRGRGQDQER KKGVPWTEEE HKLFLMGLKK YGRGDWRNIS RNFVTSRTPT QVASHAQKYF  480
IRLNSGGKDK RRSSIHDITT VNLPDEDSSN PSPSPPSVLT ATSTPSSGGT VMSEQFGVIM  540
DSKPPPPPMG QHNHFLPHPY GNVKLEPHHG GLFDDSVLMQ MQCGQLQPLG NELDGGPPIE  600
ELGRITCQPP LPVQSMVPPP ERVVWTVDEH KAAVLLLLPD SLRPPLRAPT LSCPADPPRK  660
MCYFSGSHSQ ARGIGQFPVA GCMAVRGGEN RNATRERERC GDLIRGNQLF APVPRGERKV  720
DLFAEDAILG EFLASGGACG ISSALGKRKN LNAVERDGSK NESLSTRKLK AKNRDCNLQL  780
WTCMWTQKWD GAKDACNPTQ ANSGGCQSLV PWSRVLSALP SCNWAGVGGR RTGEDSIEPW  840
LSLWASCVGV GKKAYTTHNV EPFVIGHVNA RGTGTFFSLT PQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-133263881173RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-74MYB family protein