PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g05510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 476aa    MW: 52207.1 Da    PI: 7.9321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g05510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.73.7e-432253511128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                                   lppGfrF Pt+eelv++yL+ k++g++  ++e+vi+ +d++ ++Pw+Lp +  ++ + w++F++r++++a+g r++r+t s
  Zjn_sc00012.1.g05510.1.am.mk 225 LPPGFRFYPTEEELVCFYLRSKLDGRRrDDIERVIPVADVCALDPWQLPGT--SSGEPWFYFCRRQEREARGGRPSRTTPS 303
                                   79***********************996667778***************43..46799*********************** PP

                           NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   g+Wka g+   v++++g+ +g+kkt+vfy+grap g+kt+W m+eyr+
  Zjn_sc00012.1.g05510.1.am.mk 304 GFWKAAGTPGWVYAADGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 351
                                   **********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-48220378IPR003441NAC domain
PROSITE profilePS5100547.864225378IPR003441NAC domain
PfamPF023653.3E-23226350IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MHDCVAGQEL YTQELLGRPF FFHGSSSHLG QPLDASLELP AVFPWTPAVV HSSAPSRHTG  60
TPRDPFAGER SGTVPNKPIR KARDVDTGRS PSRCGQDVRC GRLEGVSWCP LSIGDCERDA  120
HRPCRCQGMD DCVAGRGGPR SCSGARSVEV EPGSKVIRRS AKRSPRQTLN YNNAYPAILY  180
NLTCAIQGVL TLFEATSTDA CTYDQDHRPA HNFPGRTSTP AMAELPPGFR FYPTEEELVC  240
FYLRSKLDGR RRDDIERVIP VADVCALDPW QLPGTSSGEP WFYFCRRQER EARGGRPSRT  300
TPSGFWKAAG TPGWVYAADG RPIGTKKTMV FYRGRAPAGT KTKWKMNEYR ALEDADAAPP  360
SHALQIRSEF SLCRLYTESG HPRQFDRRPR AAAAAGGGGE NHLIPSSSTA ALFTSVEETT  420
GRKRKRSPQN DDTSSSNDGD GGHGHSPQQL SAQGAGTEDG GLVDVADDWT EFLDWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2922537817165NO APICAL MERISTEM PROTEIN
1ut4_B2e-2922537817165NO APICAL MERISTEM PROTEIN
1ut7_A2e-2922537817165NO APICAL MERISTEM PROTEIN
1ut7_B2e-2922537817165NO APICAL MERISTEM PROTEIN
3swm_A3e-2922537820168NAC domain-containing protein 19
3swm_B3e-2922537820168NAC domain-containing protein 19
3swm_C3e-2922537820168NAC domain-containing protein 19
3swm_D3e-2922537820168NAC domain-containing protein 19
3swp_A3e-2922537820168NAC domain-containing protein 19
3swp_B3e-2922537820168NAC domain-containing protein 19
3swp_C3e-2922537820168NAC domain-containing protein 19
3swp_D3e-2922537820168NAC domain-containing protein 19
4dul_A2e-2922537817165NAC domain-containing protein 19
4dul_B2e-2922537817165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRSAKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936262e-94FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809342.11e-105NAC domain-containing protein 90-like
TrEMBLA0A0D9WH201e-106A0A0D9WH20_9ORYZ; Uncharacterized protein
STRINGLPERR05G14390.11e-107(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-63NAC domain containing protein 90