PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00012.1.g04390.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 42255.4 Da PI: 8.2548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.6 | 1.2e-49 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zjn_sc00012.1.g04390.1.am.mk 43 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 122 79***************************.99***************7767789*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zjn_sc00012.1.g04390.1.am.mk 123 WKATGADRMIRGEDNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-57 | 42 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 42 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 44 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSRDLEDGHG GAVAAGGGAG SSEASVGRGA GDGGDSHDND LVMPGFRFHP TEEELIEFYL 60 RRKVEGRRFN VDLIADLDLY RFDPWELPAM AVMGGKEWFF YVPRDRKYRN GDRPNRVTAS 120 GYWKATGADR MIRGEDNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP PAADADPLTH 180 KSEISLCRVY KRSGIDDGHG QPSSSTQASS GRRTRTSRHM STSPASTPLS HIQHPGSFHL 240 LQGECSSVSP PTIMDPLLAA HNVPQLLQPP RPRALTGNSL AAGASVPTEG AAILASTYSL 300 LNMATVPMGS SRPVDELSTL VGHSQAYANH LSAATGSHFV LPLPSPQPTP QVAPLGALPI 360 AAPPLASVAD KLSWDWNPVP DTTARDYSNS SFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 44 | 193 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 44 | 193 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 44 | 193 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. | |||
GenBank | HQ858762 | 0.0 | HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962060.1 | 1e-170 | NAC domain-containing protein 35 | ||||
TrEMBL | K3Z6D4 | 1e-169 | K3Z6D4_SETIT; Uncharacterized protein | ||||
TrEMBL | K3Z6L9 | 1e-169 | K3Z6L9_SETIT; Uncharacterized protein | ||||
STRING | Si022103m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-89 | NAC domain containing protein 35 |