PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g02730.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 315aa    MW: 34501.5 Da    PI: 5.5853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g02730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141774148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l++ +  +G g+W+++++  g          + R++k+c++rw +yl
  Zjn_sc00012.1.g02730.1.am.mk 17 KGLWSPEEDEKLYNHIISHGVGCWSSVPKLAGkfthtvlvsrLQRCGKSCRLRWINYL 74
                                  678*****************************************************97 PP

2Myb_DNA-binding47.63.8e-1580124147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg ++++E+ l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Zjn_sc00012.1.g02730.1.am.mk  80 RGGFSQQEEGLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 124
                                   7889******************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2161274IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-211277IPR009057Homeodomain-like
SuperFamilySSF466891.65E-2514121IPR009057Homeodomain-like
SMARTSM007171.5E-101676IPR001005SANT/Myb domain
PfamPF002491.4E-121774IPR001005SANT/Myb domain
CDDcd001674.01E-102074No hitNo description
PROSITE profilePS5129423.74875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2578129IPR009057Homeodomain-like
SMARTSM007177.0E-1479127IPR001005SANT/Myb domain
PfamPF002494.2E-1380124IPR001005SANT/Myb domain
CDDcd001672.69E-1083122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRLSGGGGN LQPKLRKGLW SPEEDEKLYN HIISHGVGCW SSVPKLAGKF THTVLVSRLQ  60
RCGKSCRLRW INYLRPDLKR GGFSQQEEGL IVALHEILGN RWSQIASHLP GRTDNEIKNF  120
WNSCLKKKLR QRGIDPSTHK PISGGADAAA ALPEDQDRKP VAVDAGPAQK QPAVFDPFPA  180
TDFGFDLANV SAFYGQYDDA KASDDAVGLA VDYCSVLDVS VSENLGYGES SSNSSNWNCA  240
EMSNVLDGDA LDWASGVGGC AKAEPFTEME RRCHSGGWRV EVDDDALELE HKFAALPGSC  300
HEQSLAHFDF NLEYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271112921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391551e-118BT039155.1 Zea mays full-length cDNA clone ZM_BFb0377K22 mRNA, complete cds.
GenBankBT0635971e-118BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
GenBankHQ8587221e-118HQ858722.1 Zea mays clone UT1189 MYB transcription factor mRNA, partial cds.
GenBankKJ7274941e-118KJ727494.1 Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-145myb-related protein Hv33
SwissprotP200271e-105MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3Z8601e-143K3Z860_SETIT; Uncharacterized protein
STRINGPavir.J19191.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.15e-70myb domain protein 86