PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g01630.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 1456aa MW: 163013 Da PI: 5.9699

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g01630.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	51	105	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++ +r+eL+ +lgLt+rq ++WF+ rR k++k Zjn_sc00012.1.g01630.1.sm.mkhc 51 KRMMKTPYQLEVLERTYSEDPYPNEGKRAELSVQLGLTDRQLQMWFCHRRLKDRK 105 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-18	34	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-17	36	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	46	106	IPR001356	Homeobox domain
SMART	SM00389	7.2E-18	48	110	IPR001356	Homeobox domain
CDD	cd00086	8.25E-14	51	107	No hit	No description
Pfam	PF00046	2.3E-16	51	105	IPR001356	Homeobox domain
SMART	SM00571	1.2E-14	589	648	IPR018501	DDT domain
PROSITE profile	PS50827	13.624	589	648	IPR018501	DDT domain
Pfam	PF02791	4.0E-14	591	645	IPR018501	DDT domain
Pfam	PF05066	6.6E-16	770	837	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.4E-10	980	1022	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-12	1159	1230	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1456 aa Download sequence Send to blast
MESSGDGGDE RAAAPVVGAG SPGSASAPPA AVAGGGSGTG ASGSGGKPPV KRMMKTPYQL 60 EVLERTYSED PYPNEGKRAE LSVQLGLTDR QLQMWFCHRR LKDRKPQQTK RQQMRDEEGS 120 MPAILPPPPV LPQAPLLPNE ITIGTVGGYG EHLLPGPRRG PGRSSAVPRI TVPEIGRGYY 180 AAPQIMLPHL APMQLTEAEQ QVIDSIEALI GEPLREDGPV LGIEFDPLPP GAFGAPIVPE 240 QQKQPYRHYE SKMFPGHDHK LLKASAFLPS VDHFVPNLVS GKRKSLAGSS SHLGSLAVQE 300 YQFLPEQPSD IYERASQPHF YDVPAEASNS RISSLNRGSR FLHGTDQAPN YTFHGQTGSS 360 HLAQHGRSPG LPLASTDHDM DMSNINLTST PSHGQLGMPQ IAELENSLAP SDMGYHDEDT 420 YRVERKRKHI EEAKIAKEVE AHEKRIRKEL EKQDLLNRKR EEQMRREMER QDRERRKEED 480 RLLRERQREN ERLQREQRRE NKRMEKFLQK QSIRAEKLRQ KEELRKEKEA ARQKAANERA 540 TARRIAREYM ELMEDERLEL MELAARSKGL PSMLSLDSDT LQQLDSFRGR CCGNGFQVWK 600 FFITFADVLR LPSFTLDEFI QALHDYDSRL LGELHVGLLK VIIKDIEDVA RTPSVALGVN 660 QSSANPGGGH PQIVEGAYAW GFNILTWQQH LNFISWPEIL RQFGLCAGFG PPLKKRSTEI 720 VQYRDDNEGH DGENVISTLR SGSAAVNAAA KMKERGYTNR RRSRHRLTPG TVKFAAFHVL 780 SLEGSKGLTI LEVAEKIQKS GLRDLTTSKT PEASISAALS RDTKLFERTA PSTYCVKEPY 840 RKDPADAEAV LSVAREKIRA FQNDISECEE VEKDVDDADR DEDSDGDEAD DDPDGDEANI 900 EEKDTKSPSI VVQDGASIAI DSSINKESIG TVNTLGPATI QAKPNETSSF HTLEAVTSNS 960 ADPSIGDDTQ DTEIDESNQG ESWVQGLAEG DYCDLSVEER LNALVALIGV ATEGNSIRGV 1020 LEERLEAAIA LKKQMWAEAQ LDKRRLREEF TSKMQYDSSI VIKADTEQEN NTIESNLTPL 1080 RNLAKDNGGS ASTVNNDLLA DKQNQLIPCN IAHEQNGVIR DLSATPENLS IQQYASSEKT 1140 RSQLKSYINH KAEQLYVYRS LPLGQDRRRN RYWQFCASAS SNDPGSRRIF FESRDGYWRV 1200 IDSTEAFDAL VASLDTRGIR ESHLYSMLQS IEPSFKEAVG RKKSSGVEHP PERVLKNGSN 1260 EIVSPNCSNE FGSVASDNTI AYSDTLKIEL GRNDAERIAI SKRAHVFIKW MWKDCYNHQS 1320 TCAMKYGKKR LPELIQSCDY CYQIHLAEER HCSSCHRTFK PIHNFLEHLS QCEEKQKTDP 1380 NWKIQTADNS IPLGLRLLKL LLASIEAFLP AESLQSFWTD GYRKSWGVKL YSASSAEEIF 1440 QMLTMLEEAS SEIYCC

Sequence ? help Back to Top

Protein Sequence Length: 1456 aa Download sequence Send to blast

MESSGDGGDE RAAAPVVGAG SPGSASAPPA AVAGGGSGTG ASGSGGKPPV KRMMKTPYQL  60
EVLERTYSED PYPNEGKRAE LSVQLGLTDR QLQMWFCHRR LKDRKPQQTK RQQMRDEEGS  120
MPAILPPPPV LPQAPLLPNE ITIGTVGGYG EHLLPGPRRG PGRSSAVPRI TVPEIGRGYY  180
AAPQIMLPHL APMQLTEAEQ QVIDSIEALI GEPLREDGPV LGIEFDPLPP GAFGAPIVPE  240
QQKQPYRHYE SKMFPGHDHK LLKASAFLPS VDHFVPNLVS GKRKSLAGSS SHLGSLAVQE  300
YQFLPEQPSD IYERASQPHF YDVPAEASNS RISSLNRGSR FLHGTDQAPN YTFHGQTGSS  360
HLAQHGRSPG LPLASTDHDM DMSNINLTST PSHGQLGMPQ IAELENSLAP SDMGYHDEDT  420
YRVERKRKHI EEAKIAKEVE AHEKRIRKEL EKQDLLNRKR EEQMRREMER QDRERRKEED  480
RLLRERQREN ERLQREQRRE NKRMEKFLQK QSIRAEKLRQ KEELRKEKEA ARQKAANERA  540
TARRIAREYM ELMEDERLEL MELAARSKGL PSMLSLDSDT LQQLDSFRGR CCGNGFQVWK  600
FFITFADVLR LPSFTLDEFI QALHDYDSRL LGELHVGLLK VIIKDIEDVA RTPSVALGVN  660
QSSANPGGGH PQIVEGAYAW GFNILTWQQH LNFISWPEIL RQFGLCAGFG PPLKKRSTEI  720
VQYRDDNEGH DGENVISTLR SGSAAVNAAA KMKERGYTNR RRSRHRLTPG TVKFAAFHVL  780
SLEGSKGLTI LEVAEKIQKS GLRDLTTSKT PEASISAALS RDTKLFERTA PSTYCVKEPY  840
RKDPADAEAV LSVAREKIRA FQNDISECEE VEKDVDDADR DEDSDGDEAD DDPDGDEANI  900
EEKDTKSPSI VVQDGASIAI DSSINKESIG TVNTLGPATI QAKPNETSSF HTLEAVTSNS  960
ADPSIGDDTQ DTEIDESNQG ESWVQGLAEG DYCDLSVEER LNALVALIGV ATEGNSIRGV  1020
LEERLEAAIA LKKQMWAEAQ LDKRRLREEF TSKMQYDSSI VIKADTEQEN NTIESNLTPL  1080
RNLAKDNGGS ASTVNNDLLA DKQNQLIPCN IAHEQNGVIR DLSATPENLS IQQYASSEKT  1140
RSQLKSYINH KAEQLYVYRS LPLGQDRRRN RYWQFCASAS SNDPGSRRIF FESRDGYWRV  1200
IDSTEAFDAL VASLDTRGIR ESHLYSMLQS IEPSFKEAVG RKKSSGVEHP PERVLKNGSN  1260
EIVSPNCSNE FGSVASDNTI AYSDTLKIEL GRNDAERIAI SKRAHVFIKW MWKDCYNHQS  1320
TCAMKYGKKR LPELIQSCDY CYQIHLAEER HCSSCHRTFK PIHNFLEHLS QCEEKQKTDP  1380
NWKIQTADNS IPLGLRLLKL LLASIEAFLP AESLQSFWTD GYRKSWGVKL YSASSAEEIF  1440
QMLTMLEEAS SEIYCC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808936.1	0.0	homeobox-DDT domain protein RLT2
TrEMBL	A0A2S3H9N7	0.0	A0A2S3H9N7_9POAL; Uncharacterized protein
STRING	Si020949m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator