PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00012.1.g01420.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27082.9 Da PI: 5.1994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 3e-16 | 116 | 159 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 y+GVr+++ +g+++AeIrd + ng +r++lg+f taeeAa a+++ Zjn_sc00012.1.g01420.1.am.mk 116 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYDR 159 69*******.**********54455..******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.41E-20 | 115 | 172 | No hit | No description |
SMART | SM00380 | 1.2E-18 | 116 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.11 | 116 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 116 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-22 | 116 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 116 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.3E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEKILQRL 60 PSLGRWISMG AEEWDELLSG TTPDASGEEL LVSSPPALKH EDRASSRAAP VPTCKSYRGV 120 RRRPWGKFAA EIRDTRRNGA RVWLGTFATA EEAALAYDRE VAAAGSGGSE ATRVLRRRRR 180 RTGAADAASS TRSACSDQTM VSFAWGSGQE GGMMTERSSS DAGAIAFEDI GGECWDYLFA 240 PLWGDDILIR HQHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 115 | 159 | 4 | 48 | ATERF1 |
3gcc_A | 3e-19 | 115 | 159 | 4 | 48 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 180 | RVLRRRRRR |
2 | 176 | 181 | RRRRRT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 5e-32 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 5e-32 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 5e-32 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806647.1 | 9e-85 | ethylene-responsive transcription factor 15-like | ||||
TrEMBL | A0A2S3H9P9 | 2e-83 | A0A2S3H9P9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RAX9 | 2e-83 | A0A3L6RAX9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ca00939.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-22 | ethylene response factor 1 |