PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00012.1.g01260.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 571aa MW: 60765.6 Da PI: 7.5554 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.5e-30 | 219 | 277 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +v+++tYeg+Hnh+ Zjn_sc00012.1.g01260.1.am.mk 219 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCSVRKQVQRCAEDRTVLITTYEGSHNHP 277 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-33 | 203 | 279 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-27 | 211 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 213 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 218 | 278 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 220 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MTMSMRAEIK EVLVLFWVFS SSSSPLCGQL ESTKVELRQS KEEIQRLRKI VSDLSARYQS 60 LHAHFVAFMQ QQRNLEVPRP EQQLNLDPEK KEQDASPLPK QFISLDVGAD AAPSPGSSLA 120 GSAVPPQLMD YSPGGTGTGN GGGRMPLPTF DQHRHRLHER VGSPEEAPPP QHVTQGWLAS 180 PSKVPKFLPA KTPEAVPEAA TMRKARVSVR ARSEAAMISD GCQWRKYGQK MAKGNPCPRA 240 YYRCTMAAGC SVRKQVQRCA EDRTVLITTY EGSHNHPLPP AAMAMASTTA AAASMLLSGS 300 MPSADGSLMA GSNFLARAVL PCSSSVATIS ASAPFPTVTL DLTQPAPPAA SSSCALAEPA 360 QLKAALAEAA RPVQLPQLFG QKLYDHGKLS AVQAAAGVKA TEGGAIADTV SAAAAITSDP 420 NFTAVLAAAI TSYIGSSGAG GSSGTVQPMA SGGADNSYAD FERSGWQHDT EGAESISRFR 480 CPSLRPGHAF DINPVHVARS TVPWSLLNRH TVEERRADLV TERTDEVEYC GRLDRPAPFG 540 ASAVEYNAAW QSSASERELL AAFTIVDQVY H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 209 | 279 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-21 | 209 | 279 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 1e-139 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AP014961 | 1e-139 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963595.1 | 1e-146 | WRKY transcription factor 42 | ||||
Swissprot | Q9XEC3 | 1e-101 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A0E0L5U9 | 1e-153 | A0A0E0L5U9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G23690.1 | 1e-154 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12695 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 2e-59 | WRKY family protein |