PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00012.1.g01140.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 422aa MW: 45126.5 Da PI: 8.1047 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.7 | 3.4e-20 | 285 | 347 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk e+rk +NRe+ArrsR RK+ae+eeL++ v++L++eN +Lk+e+++l++ ++kl+ e+ Zjn_sc00012.1.g01140.1.am.mkhc 285 ERELKHEKRKVSNRESARRSRMRKQAETEELATQVESLTQENVSLKSEISRLTNSSEKLRLEN 347 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.7E-27 | 49 | 140 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 5.2E-17 | 280 | 344 | No hit | No description |
Pfam | PF00170 | 2.3E-18 | 285 | 347 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 4.4E-20 | 285 | 349 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.702 | 287 | 350 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-11 | 289 | 343 | No hit | No description |
CDD | cd14702 | 2.02E-21 | 290 | 337 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 292 | 307 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MGKGDGCSSE SFCISLRPSL TLSARVSASQ EDDNLNFYMT GKHIFVKGMA HDDAVATQKT 60 GKAASPPKDQ PAPYPYPDWS TMQAYYGPGV LPPTYFAPEI APGHAPPYMW GPQPIMPPPF 120 GTPYTPMYPH NGAYPHPLVP MISNPLSVEP AKSANSKDKS FSKTLNEING AAASAGSGSS 180 KRTMSSSEDY SAEGSSVNEQ KVSKTSRKRT SDDGPDAKME GVIASNHTLG HTSILPNHCF 240 PAPVIKPNAT NVANLREMGA AISPSPAAII SAHTGTATDL SIKDERELKH EKRKVSNRES 300 ARRSRMRKQA ETEELATQVE SLTQENVSLK SEISRLTNSS EKLRLENSAL MVKLKDPAAP 360 KPAESAPDKA ATPGVAPRDA ENFLSMIDGS NTAGAAQRTE HGEPKLRQLF DSQPATNVTA 420 VS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 308 | RRSRMRKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807251.1 | 0.0 | common plant regulatory factor 1-like isoform X1 | ||||
TrEMBL | A0A0A9PLG0 | 0.0 | A0A0A9PLG0_ARUDO; GBF1 | ||||
STRING | Pavir.J01411.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 1e-26 | G-box binding factor 2 |