PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g00810.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 254aa    MW: 26403.3 Da    PI: 7.9391
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g00810.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA641.7e-20127161135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Zjn_sc00012.1.g00810.1.am.mk 127 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 161
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.246121157IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-19121173IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14123161No hitNo description
Gene3DG3DSA:3.30.50.101.4E-17125161IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.19E-14126158No hitNo description
PfamPF003203.3E-18127161IPR000679Zinc finger, GATA-type
PROSITE patternPS003440127152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLDRYPNQSI SMVASTTFSL FFPPLPKVGQ WPDEDDHSSI TTSPSSPSSS STGSVDCTLS  60
LGTPSSRRAS AAAEPMTKHV ALPPPAHPSY VAWDDVVGGH QSSDYCRKPA GGAAKAGAHD  120
AFADRRCANC GTSSTPLWRN GPRGPKSLCN ACGIRFKKEE RRAAATAAME TGAGASAGCG  180
YSAQRAQYEY AAAAARASPC EGSFPCGGGV DADANASANT NAPFLPWRLN VVAPAPAPAF  240
AAVWPERTSL FQYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.12e-59GATA transcription factor 15
SwissprotQ6L5E55e-45GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A3L6R8D02e-60A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.Ca00998.1.p5e-58(Panicum virgatum)
STRINGSi022366m5e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-17GATA transcription factor 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]