PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g00770.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 180aa    MW: 20403.9 Da    PI: 8.6718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g00770.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-091457344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Zjn_sc00012.1.g00770.1.am.mk 14 QWTPKQNKLFEQALAVYDKDtpdRWTNIARAVG-GKSAEEVRRYY 57
                                  7********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.5921065IPR017884SANT domain
SMARTSM007173.7E-81163IPR001005SANT/Myb domain
PfamPF002494.2E-71357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-51467IPR009057Homeodomain-like
SuperFamilySSF466896.01E-121469IPR009057Homeodomain-like
CDDcd001671.57E-71560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASLSMTKPS ARAQWTPKQN KLFEQALAVY DKDTPDRWTN IARAVGGKSA EEVRRYYELL  60
EEDVKHIESG KVPFPEYRGN AGAATGYEAD RYEYLILYAP FEVEAYEDLT RRKEAVREDA  120
TLRARVTQHI AQYEWYIPTA RAEPGHKANG EPKEAQTPRV PVLSGSPPPR SAPIRNKPPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29482178RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849214e-72KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.14e-50protein RADIALIS-like 3
TrEMBLA0A3L6T7C14e-49A0A3L6T7C1_PANMI; Protein RADIALIS-like 3
STRINGSi023770m2e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-24RAD-like 1