PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g08620.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 506aa    MW: 55016.2 Da    PI: 8.023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g08620.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +grWT+eEde l++++k++G g+W++ +++ g+ R++k+c++rw +yl
  Zjn_sc00011.1.g08620.1.am.mk 14 KGRWTKEEDEVLAKYIKEHGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding31.15.5e-102502791848
                                   HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   q  + +W++Ia +++ gRt++++k++w+++l
  Zjn_sc00011.1.g08620.1.am.mk 250 QIDTCQWSLIAGHLP-GRTDNEIKNHWNSHL 279
                                   334449*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129422.81965IPR017930Myb domain
SMARTSM007177.1E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
SuperFamilySSF466892.86E-211590IPR009057Homeodomain-like
CDDcd001673.61E-111661No hitNo description
PROSITE profilePS500903.9156289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-76590IPR009057Homeodomain-like
SMARTSM007176.7E-966281IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-8245283IPR009057Homeodomain-like
CDDcd001673.68E-6248279No hitNo description
PfamPF002492.0E-7253279IPR001005SANT/Myb domain
PROSITE profilePS500906.539255279IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-12255279IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEVLAKYIK EHGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMILK LHATLGNRYA LRHLSLKLRL GVTRARSLSS IDVAGSSAAG  120
RLLSCDSGWR PAACQRGERR RSLHSAVGVR HCSAGVARVE EAHTPGPRRA AAGVQTPNEA  180
PSLVDHWTWR YGVPGLQEHM GSLSLTAPCM LGSCWGALRV PSPFFHVRGV LRVIVSFLDL  240
GTGLHTTCRQ IDTCQWSLIA GHLPGRTDNE IKNHWNSHLS RRASGFRLGG NGVIVNVNLS  300
KLPGGGKRRG GRTSRGGNAT AAKGAKKKNA KGKEKEKTAE VMLLHEVKKG QEKDTDAPTP  360
SYQPRHDQSE EHASASGVTS DGLESDGPLG LTEEMVSAPL GHASPKLEMG PDGACVDHKI  420
GLCMDSDDWP RVQSGSGPDG LPSGDVAQEL GDNKALEDWD LTELDIAVDH DVWNSLAWDY  480
DDMVDVVPQG GQQGELVPDL FFLDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-121290582B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218801e-100AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399011e-100BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633081e-100BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882001e-100BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBankHQ8587211e-100HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBankHQ8587681e-100HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.11e-57myb-related protein P
TrEMBLA0A0A9IUA41e-64A0A0A9IUA4_ARUDO; MYB-IF35
STRINGSi002107m5e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3340834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-47myb domain protein 111