PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g08000.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 403aa MW: 43021 Da PI: 7.1715

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g08000.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.3	2e-27	75	183	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.....peeeredamsslvyeAearard 71 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a + r+++++sl+yeA+ r+ + Zjn_sc00011.1.g08000.1.am.mk 75 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgggagADGLRPAVFRSLLYEACGRIVN 155 6************************************************996666556677************** PP DUF260 72 PvyGavgvilklqqqleqlkaelallke 99 PvyG+vg+++++q+q +q+++e++l +e Zjn_sc00011.1.g08000.1.am.mk 156 PVYGSVGLLWSGQWQACQAAVEAVLKGE 183 ********************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.52	74	185	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-22	75	179	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDSPRHRKQG PSLYYFHKTR SLDPSRVSFS FPFCEVAGGL AGGLPTGRDV ETTRGARLRP 60 SPDANGAKPR KMRMSCNGCR VLRKGCSDAC TIRPCLQWIK TPEAQANATV FLAKFYGRAG 120 LLNLLAAPGG GAGADGLRPA VFRSLLYEAC GRIVNPVYGS VGLLWSGQWQ ACQAAVEAVL 180 KGEPLVRVAS AAAVDQPEAA ASPPLGTRAA CDIRHVVKDR DAAAAADLLR VSRAGRTKFK 240 RAATSSTTSR AKAKTTTTTK PDNGRASPRP GTPTQEQEEL VVVAGSGDEL DDAHAPTSHH 300 DHEESAGSHQ HLSDRDRAAA QEGSSEDTEA EAGSHVSQAE EHHSYVHASL HDEEDEDEDE 360 EVGLELTLGL EPVVLRQPRS PSCNLRRLST VSSLMATRLE LPA

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDSPRHRKQG PSLYYFHKTR SLDPSRVSFS FPFCEVAGGL AGGLPTGRDV ETTRGARLRP  60
SPDANGAKPR KMRMSCNGCR VLRKGCSDAC TIRPCLQWIK TPEAQANATV FLAKFYGRAG  120
LLNLLAAPGG GAGADGLRPA VFRSLLYEAC GRIVNPVYGS VGLLWSGQWQ ACQAAVEAVL  180
KGEPLVRVAS AAAVDQPEAA ASPPLGTRAA CDIRHVVKDR DAAAAADLLR VSRAGRTKFK  240
RAATSSTTSR AKAKTTTTTK PDNGRASPRP GTPTQEQEEL VVVAGSGDEL DDAHAPTSHH  300
DHEESAGSHQ HLSDRDRAAA QEGSSEDTEA EAGSHVSQAE EHHSYVHASL HDEEDEDEDE  360
EVGLELTLGL EPVVLRQPRS PSCNLRRLST VSSLMATRLE LPA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954764	1e-108	EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	1e-105	LOB domain-containing protein 42-like
TrEMBL	I1IL92	1e-104	I1IL92_BRADI; Uncharacterized protein
STRING	BRADI4G16740.1	1e-105	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-53	LOB domain-containing protein 41