PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g07440.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 980aa    MW: 105530 Da    PI: 10.2182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g07440.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05595617123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+ Cgk F r  nL+ H r H
  Zjn_sc00011.1.g07440.1.am.mk 595 YVCEVCGKGFQRDQNLQLHRRGH 617
                                   9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-8594617No hitNo description
PROSITE profilePS5015711.822595617IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5595617IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0081595617IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280597617IPR007087Zinc finger, C2H2
SMARTSM0035534637667IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.85E-8667692No hitNo description
SMARTSM00355250672692IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MAYWRANLAI DRPLFPGTKK RAAHRSQRGL VETRQDHDRV LSCLFRHGQS TGQRLASLLG  60
LTFGSDSNEH TRTQPIDDAP SNTVRVGYAT ERNLVRATGR GRPVPVVPGG STRAAGGVAS  120
VLETVRTPSK CLDRNLHQVL RGRAHLLRRL RTELESCVVS KLGREFLSQS YMAAGCLSRL  180
FWRVCNEASP TWRGLVDAER TRPSALMYNC AYRARVGKLR FASHRSTLHE RDRKPPPRTG  240
RGRIQDTTTG RGPSLVAFSK PRPITCKLQH VKPSPSAPVE WACKAGYGPR LMRNATQRCG  300
KHKLGRRPFY IADNFIVLRS SSEVSTDIAA DAVVSVVSFT DVVCLCAPGR TPVISLINLL  360
ALLITSSATD QVNMPRPWVG TELQLASSCS ATARDAVVVN VVRALHTGGE CSSSIRGRGE  420
WNQRKRQKAP RAVWPSCCSL PEAGAALDQL NLTERPRHAR REEVSTPVPT AVATAGSSRT  480
STSRSGPAPA CARADPFVNY SSKRGWVLLA SEEGEEEDRE EEMMLKDLAA IQQQQQLAAD  540
ENMSNLTSAS GDQASVSSHP LPPPAKKKRS LPGNPDPDAE VIALSPRTLM ATNRYVCEVC  600
GKGFQRDQNL QLHRRGHNLP WKLKQRNPKD VARKKVYVCP EPGCVHNDPA RALGDLTGIK  660
KHFSRKHGEK KWKCDRCSKR YAVHSDWKAH SKVCGTRERD SFITHRAFCD ALAEESARAV  720
TAAAAVAGQQ HPGMLFPHAG AGGGAGLQLP SVLDPSQPLG GHGLSLQEMC LKREQQPFSW  780
LAAQQQQQQM DMPGAGLSST VFGSARPLDQ DYVGSSTPDS NSQPAGLTFG FSPSSAAGTA  840
SAAHMSATAL LQKAAQMGAT LSRPSNQGQM ASTHSRSATT NAATATAPAS AAATSNVTST  900
GLNFGASHFG TDERSDREAA GNAAGAGGAN DGHTRDFLGL RAFSHGDILS IAGFDPCMSS  960
ASSSAAAYEQ GHPNSKQWHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-21668718364Zinc finger protein JACKDAW
5b3h_F9e-21668718364Zinc finger protein JACKDAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1621634KLKQRNPKDVARKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056631e-177AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.17e-89indeterminate(ID)-domain 7