PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g05220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 312aa    MW: 34769.1 Da    PI: 8.2843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g05220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.6e-1476134148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48 
                                   +g W++eEde+lv  ++++G  +W++I++  g           + R++k+c++rw++yl
  Zjn_sc00011.1.g05220.1.am.mk  76 KGLWSPEEDERLVSHIARFGVSCWSSIPELTGdaldlvflaarLSRCGKSCRLRWLNYL 134
                                   678******************************************************97 PP
2Myb_DNA-binding47.83.4e-15140182145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr++++E++l++ ++k lG+  W+ Ia++++ gR+++++k++w+
  Zjn_sc00011.1.g05220.1.am.mk 140 RGRFSQQEEDLIIALHKTLGNS-WSQIAARLP-GRSDNEIKNFWN 182
                                   89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.66371134IPR017930Myb domain
SuperFamilySSF466891.5E-2574181IPR009057Homeodomain-like
SMARTSM007177.3E-1175136IPR001005SANT/Myb domain
PfamPF002497.8E-1376134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2177141IPR009057Homeodomain-like
CDDcd001671.78E-879134No hitNo description
PROSITE profilePS5129423.981135189IPR017930Myb domain
SMARTSM007174.3E-15139187IPR001005SANT/Myb domain
PfamPF002491.0E-13140182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-25142189IPR009057Homeodomain-like
CDDcd001678.92E-10142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSGSFDPSNR RLSKMDVWDG FLGLKLIKHD YWMEGTRLET TYRSVAAFAM GASTAARAYQ  60
MGRVRPCCSP EKKLRKGLWS PEEDERLVSH IARFGVSCWS SIPELTGDAL DLVFLAARLS  120
RCGKSCRLRW LNYLRPDLKR GRFSQQEEDL IIALHKTLGN SWSQIAARLP GRSDNEIKNF  180
WNARLRKKLR QKEASSKDHV ASRSRNHRED ERKEPPPAMF NPLLPRDEDH ITCSGAATSS  240
CDESSAAGSA AAAKLQMPSA ASSASASTEA AGDSQDDFLR AMVEDASYLF GDFYLDGSQD  300
GLSSFWEGHA FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-276318916128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189RLRKKLR
2184190LRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-108myb-related protein Hv33-like
SwissprotP200275e-55MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3L6SVX51e-109A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-55myb domain protein 86