PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g04750.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 529aa MW: 58304.7 Da PI: 8.922

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g04750.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.4e-08	222	258	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 de+++ a+ ++G + Wk+I + + ++t+ q++s+ qky Zjn_sc00011.1.g04750.1.am.mk 222 DEQIAVAFFRFGRD-WKKIEEQVR-TKTAVQIRSHAQKY 258 89999999**77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-5	185	265	IPR009057	Homeodomain-like
CDD	cd00167	8.42E-4	218	259	No hit	No description
SuperFamily	SSF46689	1.2E-7	220	264	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-7	222	258	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCPNSQTT RPVRIRTQPG THALLSPREP 60 ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP 120 APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK 180 PYTITKPRER WSTEEHGRFL DALLIQDLSR IEIRFGGSVE RDEQIAVAFF RFGRDWKKIE 240 EQVRTKTAVQ IRSHAQKYFI KVQKLGLAAG LPPQYPRRRF VMHQQQQQGS TSTAGSSAAA 300 VPVLQGQPHG APVAVPMPGP SCDGVVVHGS LGWDCAGILP STAGGKHLCS ATVYFLINAP 360 GTSAWVNTDG HGQIAPPASL IGAPSFSDAT VDWAGSSSSE PLASGDAQDE FIQLPLSPDD 420 LNFARVYRFV GDMFDPNTVC QVDSHLQRLK GMDDITVKTV STRSNRFTTF FRPPDIRMDD 480 EAPRMAEFRN AQGPVRCTLH QNTYVHDHHN TDAPAQAWLA SGRMQTSSR

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCPNSQTT RPVRIRTQPG THALLSPREP  60
ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP  120
APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK  180
PYTITKPRER WSTEEHGRFL DALLIQDLSR IEIRFGGSVE RDEQIAVAFF RFGRDWKKIE  240
EQVRTKTAVQ IRSHAQKYFI KVQKLGLAAG LPPQYPRRRF VMHQQQQQGS TSTAGSSAAA  300
VPVLQGQPHG APVAVPMPGP SCDGVVVHGS LGWDCAGILP STAGGKHLCS ATVYFLINAP  360
GTSAWVNTDG HGQIAPPASL IGAPSFSDAT VDWAGSSSSE PLASGDAQDE FIQLPLSPDD  420
LNFARVYRFV GDMFDPNTVC QVDSHLQRLK GMDDITVKTV STRSNRFTTF FRPPDIRMDD  480
EAPRMAEFRN AQGPVRCTLH QNTYVHDHHN TDAPAQAWLA SGRMQTSSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819438.1	1e-97	protein REVEILLE 8-like isoform X1
TrEMBL	A0A2T7DRB8	1e-102	A0A2T7DRB8_9POAL; Uncharacterized protein
STRING	ORGLA01G0032300.1	3e-85	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-30	MYB_related family protein